PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g062260.2.1

Common Name

LOC101247043

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

BES1

Protein Properties

Length: 316aa MW: 33828 Da PI: 8.8962

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g062260.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	210	6.3e-65	2	145	1	150
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 ++++r+ptwkErEnnkrRERrRRaiaaki+aGLR++Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+e+ + g s+s sp+ Solyc07g062260.2.1 2 TSGTRMPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYQLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPMERLDFLGGSTSLSPC 92 5899************************************************************************************* PP DUF822 92 sslqsslkssalaspvesysaspksssfpspssldsislasa..asllpvlsvlslvsssl 150 ss+q +sp +s ++sp+sssfpsp+s++ + + + +sl+p+l++ls+ sss+ Solyc07g062260.2.1 93 SSYQ--------PSPFTSNNPSPASSSFPSPASSSYAANLNMdgKSLIPWLKNLSSGSSSA 145 ........9************9988766554433459*******9966654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.3E-64	3	139	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MTSGTRMPTW KERENNKRRE RRRRAIAAKI FAGLRMYGNY QLPKHCDNNE VLKALCNEAG 60 WTVEPDGTTY RKGCKPMERL DFLGGSTSLS PCSSYQPSPF TSNNPSPASS SFPSPASSSY 120 AANLNMDGKS LIPWLKNLSS GSSSASSSKL PNFHIHTGSI SAPVTPPFSS PTARTPRIKT 180 DAGWAGFRYP YLPSSTPASP GRQNFINAEC FAGISGPPSP TYSLVSPNPF GFKMDGLSRG 240 GSRMCTPGQS GACSPAIAAG LDHNADVPMA EVMISDEFAF GSNVAGMVKP WEGERIHEDC 300 VPDDLELTLG SSKTR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	1e-23	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	1e-23	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	1e-23	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	1e-23	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.16004	0.0	flower\| fruit\| trichome

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g062260.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004244287.1	0.0	BES1/BZR1 homolog protein 4
Refseq	XP_015080953.1	0.0	BES1/BZR1 homolog protein 4
Swissprot	Q9ZV88	1e-121	BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBL	A0A3Q7HH43	0.0	A0A3Q7HH43_SOLLC; Uncharacterized protein
STRING	Solyc07g062260.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1984	24	64
Representative plant	OGRP1595	15	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	1e-108	BES1/BZR1 homolog 4

Link Out ? help Back to Top
Phytozome	Solyc07g062260.2.1
Entrez Gene	101247043

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]