PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g062050.2.1

Common Name

LOC101252101

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

STAT

Protein Properties

Length: 704aa MW: 79468.8 Da PI: 6.4034

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g062050.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	179.2	6.1e-56	213	333	1	121
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipk 91 +dv+l++ +++p++ + evvasL+y+d+ ++vek+ da+a LL+sydG+e++s+drp+k++ GrasfklkisqLsskcdnrLfri+f+ip+ Solyc07g062050.2.1 213 IDVTLMDNFSRPMTEEAEVVASLVYSDDNTLVEKPVDADAALLTSYDGIEYASSDRPSKVISGRASFKLKISQLSSKCDNRLFRIRFDIPR 303 69*************************************************************************************** PP STAT 92 lkkypfleavskpirCisrsrntrsssltk 121 l kypfle++s+pirCisr+r+tr++sl+ Solyc07g062050.2.1 304 LGKYPFLEVFSRPIRCISRNRSTRATSLML 333 **********************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.60.120.200	1.6E-5	16	156	IPR013320	Concanavalin A-like lectin/glucanase domain
SuperFamily	SSF49899	9.01E-8	21	135	IPR013320	Concanavalin A-like lectin/glucanase domain
SuperFamily	SSF55550	2.77E-6	601	668	IPR000980	SH2 domain
Gene3D	G3DSA:3.30.505.10	7.1E-5	601	664	IPR000980	SH2 domain
PROSITE profile	PS50001	9.529	605	703	IPR000980	SH2 domain

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence Send to blast
MGVKDYSFLR DLQVEFKNYE VTNKFSLCFW LYLNEPSTLP STILYQEHPD VTSHAPFLLL 60 DDRKKILLFP SLISSHSNIT SWREVAHAIS ESEFPTKKWV HVGCEVTQDL LHLYFDGKIV 120 GEKCLTSSLS NDMGSDNSRI SLTCITGKNS QLDGYVHSSE LFPMLSTIEN HYVKDPPVQL 180 SIDSSSAYEI EEDSDGVWSI VGGKASCRRN FDIDVTLMDN FSRPMTEEAE VVASLVYSDD 240 NTLVEKPVDA DAALLTSYDG IEYASSDRPS KVISGRASFK LKISQLSSKC DNRLFRIRFD 300 IPRLGKYPFL EVFSRPIRCI SRNRSTRATS LMLKKSSLGI HLLNGSQSPV LDDGSYDRPC 360 IVREAKQSPS SKRVKLGQEK LCANFKDDFV LKQANGGSRS HSWTSEDNHA HQNSLVARPV 420 SHGGAENFSS DSENSETTNS PVDDLPNNRD PISDMVVFKY CLADLNERRL LLKEMAMTAK 480 EEELATFAER VSLFSGCSHH RHQISISKRL IEEGINCWNL ISNYNHHVLW ENLVSGLQEH 540 FLKMTFGRIR SLTHQDFNLL RRVSGCQDLV SQDNFEKLWC WLYPVAFTLS QQCISSLWGS 600 TSPVWIEGFI TKEEAESSLT ILGALQEPGT YILRFPTSRS WPHPDAGNLV VTYVGSDYTI 660 HHRLISLESI YSSGVKGTTI RPIQDMLLEQ PELRRLGRIV RSL*

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence Send to blast

MGVKDYSFLR DLQVEFKNYE VTNKFSLCFW LYLNEPSTLP STILYQEHPD VTSHAPFLLL  60
DDRKKILLFP SLISSHSNIT SWREVAHAIS ESEFPTKKWV HVGCEVTQDL LHLYFDGKIV  120
GEKCLTSSLS NDMGSDNSRI SLTCITGKNS QLDGYVHSSE LFPMLSTIEN HYVKDPPVQL  180
SIDSSSAYEI EEDSDGVWSI VGGKASCRRN FDIDVTLMDN FSRPMTEEAE VVASLVYSDD  240
NTLVEKPVDA DAALLTSYDG IEYASSDRPS KVISGRASFK LKISQLSSKC DNRLFRIRFD  300
IPRLGKYPFL EVFSRPIRCI SRNRSTRATS LMLKKSSLGI HLLNGSQSPV LDDGSYDRPC  360
IVREAKQSPS SKRVKLGQEK LCANFKDDFV LKQANGGSRS HSWTSEDNHA HQNSLVARPV  420
SHGGAENFSS DSENSETTNS PVDDLPNNRD PISDMVVFKY CLADLNERRL LLKEMAMTAK  480
EEELATFAER VSLFSGCSHH RHQISISKRL IEEGINCWNL ISNYNHHVLW ENLVSGLQEH  540
FLKMTFGRIR SLTHQDFNLL RRVSGCQDLV SQDNFEKLWC WLYPVAFTLS QQCISSLWGS  600
TSPVWIEGFI TKEEAESSLT ILGALQEPGT YILRFPTSRS WPHPDAGNLV VTYVGSDYTI  660
HHRLISLESI YSSGVKGTTI RPIQDMLLEQ PELRRLGRIV RSL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.23417	0.0	fruit\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g062050.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC210354	0.0	Solanum lycopersicum chromosome 7 clone C07HBa0102J11, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004244305.1	0.0	SH2 domain-containing protein A
TrEMBL	A0A3Q7HGF0	0.0	A0A3Q7HGF0_SOLLC; Uncharacterized protein
STRING	Solyc07g062050.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9394	23	25
Representative plant	OGRP5941	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17040.1	0.0	SH2 domain protein A

Link Out ? help Back to Top
Phytozome	Solyc07g062050.2.1
Entrez Gene	101252101

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]