PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g056280.2.1

Common Name

LOC101248692

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 323aa MW: 36645 Da PI: 6.448

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g056280.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.4	1.5e-33	184	241	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts++C+vkk+vers edp++v++tYeg+Hnh+ Solyc07g056280.2.1 184 EDGYRWRKYGQKAVKNSPFPRSYYRCTSQKCSVKKRVERSYEDPSIVITTYEGQHNHH 241 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.5E-35	168	243	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-29	175	243	IPR003657	WRKY domain
PROSITE profile	PS50811	31.961	178	243	IPR003657	WRKY domain
SMART	SM00774	3.5E-39	183	242	IPR003657	WRKY domain
Pfam	PF03106	1.1E-26	184	241	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MSDNNPFNHD YAFPFFGENP SIYGNQANNT QNPHHNHHDF DYSSSYMSNL TECLHGGSMD 60 HYNTLSSAFG MNNCSSSSEV VCPQPSIDHH QECSRKNINS VDNQIPLTPN SLISSSSNSE 120 VGGCHEEDSS KIKKDDDQCE LDGDDDDDDN KSKKVGKLAK KKGEKKQKEP RFAFMTKSEI 180 DNLEDGYRWR KYGQKAVKNS PFPRSYYRCT SQKCSVKKRV ERSYEDPSIV ITTYEGQHNH 240 HCPATLRGNA AAALLSPSFL SSTQQQLYHN PNEQQIFYNP NIPINNSFYN NNYHQQQPQL 300 GPDYQYGLFQ DMVASLINKR EP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-26	176	244	10	78	Probable WRKY transcription factor 4
2lex_A	2e-26	176	244	10	78	Probable WRKY transcription factor 4
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.13909	0.0	callus\| cell culture\| flower

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Function -- GeneRIF ? help Back to Top
The activation of the salicylic acid pathway during stress-response in tomato induces WRKY16, which in turn modulates transcription of SlTRN1 gene.[WRKY16] [PMID: 26706073]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g056280.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC170036	0.0	Solanum lycopersicum WRKY16 protein mRNA, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001266266.1	0.0	WRKY transcription factor 30
Swissprot	Q8VWJ2	2e-52	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	K4CGG1	0.0	K4CGG1_SOLLC; WRKY16 protein
STRING	Solyc07g056280.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1485	24	75
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	8e-46	WRKY DNA-binding protein 71

Link Out ? help Back to Top
Phytozome	Solyc07g056280.2.1
Entrez Gene	101248692

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Mandal A,Sarkar D,Kundu S,Kundu P Mechanism of regulation of tomato TRN1 gene expression in late infection with tomato leaf curl New Delhi virus (ToLCNDV). Plant Sci., 2015. 241: p. 221-37 [PMID:26706073] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]