PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc07g055710.2.1 | ||||||||
Common Name | LOC101259859 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HSF | ||||||||
Protein Properties | Length: 389aa MW: 44375.1 Da PI: 6.5176 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.5 | 5.1e-34 | 16 | 106 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl k+ye+++d+ ++ ++sws+ng+sfvv+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+kv+ e+ weF+++ F +g+++ Solyc07g055710.2.1 16 FLLKTYELVDDSYTNPVVSWSHNGRSFVVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEDFLRGRRH 97 9***************************************************************9998.........************** PP XXXXXXXXX CS HSF_DNA-bind 93 llekikrkk 101 ll++i r+k Solyc07g055710.2.1 98 LLKNIYRRK 106 *******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.7E-38 | 8 | 100 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.67E-35 | 11 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.6E-59 | 12 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.3E-30 | 16 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-19 | 16 | 39 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-19 | 54 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 55 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-19 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MDNCNGGSSS SSPAPFLLKT YELVDDSYTN PVVSWSHNGR SFVVWNPPEF ARDLLPKYFK 60 HNNFSSFIRQ LNTYGFRKVD PEQWEFANED FLRGRRHLLK NIYRRKPIHS HSAAAGTGQS 120 VAPLTDSERQ EYEDEIERLK RENSLLQSSA ENQLKFNGEY ESGIKSMEQR LQNVAHRQGK 180 LISLLAQLLQ TPGFSSDFTQ SASRKRRLLI SNYLIDEENS PKFDLEMVKK LDSSINFWER 240 FLYGVQTQDF EHTHSPIVTH TSSNDSAKRN SPIDHSPSSS ELGPLNPVMS STYENLERQL 300 KPSDNQIECK TSKTSELVSN SGNDVFWQQF LTETPGCTEP QQVENKGINE STRDIRLGDS 360 HRYWWNRGVN LENLAERMGH LSSPATGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-23 | 6 | 105 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-23 | 6 | 105 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-23 | 6 | 105 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.8440 | 0.0 | callus| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc07g055710.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004243245.1 | 0.0 | heat stress transcription factor A-4c | ||||
TrEMBL | A0A3Q7HDC1 | 0.0 | A0A3Q7HDC1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g055710.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8435 | 23 | 29 | Representative plant | OGRP5235 | 10 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45710.1 | 2e-85 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc07g055710.2.1 |
Entrez Gene | 101259859 |
Publications ? help Back to Top | |||
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