PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g055280.2.1

Common Name

LOC101267623

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 276aa MW: 29895.8 Da PI: 5.5752

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g055280.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96	2.6e-30	75	133	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ itY +eHnh+ Solyc07g055280.2.1 75 QDSWSWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRLDPTMLLITYCSEHNHQ 133 79***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.8E-31	67	135	IPR003657	WRKY domain
PROSITE profile	PS50811	31.628	69	135	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-26	70	135	IPR003657	WRKY domain
SMART	SM00774	2.2E-36	74	134	IPR003657	WRKY domain
Pfam	PF03106	2.0E-25	75	133	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MEDSSYKNLF FHKQEDSTGT PPDNAADSCF SGDEAAEVSM PSPRKSRRGA KKKVISVPII 60 EGDGSRSKGE VYPPQDSWSW RKYGQKPIKG SPYPRGYYRC SSSKGCPARK QVERSRLDPT 120 MLLITYCSEH NHQIPAAAAA KHHHHNHPTT TTSSPTTSTG TAGDNNATAA VATDSTVVDK 180 SSPEEPDLFA YQHDNGFSEL AGELGWFSDM GTTTTFMEST SSSMAGSTWN DSDVALMLPI 240 REEDQSLYGD LGELPECSVV FRRYSVETPC CGGTG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	8e-21	52	135	6	79	Disease resistance protein RRS1
5w3x_D	8e-21	52	135	6	79	Disease resistance protein RRS1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.5102	1e-106	callus\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g055280.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013284	0.0	Lycopersicon esculentum clone 134891F, mRNA sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010323672.1	0.0	probable WRKY transcription factor 65 isoform X1
TrEMBL	A0A3Q7HDB4	0.0	A0A3Q7HDB4_SOLLC; Uncharacterized protein
STRING	Solyc07g055280.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7468	22	32
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.1	7e-59	WRKY DNA-binding protein 69

Link Out ? help Back to Top
Phytozome	Solyc07g055280.2.1
Entrez Gene	101267623

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]