PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g053750.1.1
Common NameLOC101249100
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 418aa    MW: 46960.1 Da    PI: 7.6865
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g053750.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.6e-09132152526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C+ f++ G C++Gd+C FaHg
  Solyc07g053750.1.1 132 VCSEFRK-GNCSRGDNCEFAHG 152
                         7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.44E-5126156IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6127153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.45128154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5131154IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-7132152IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258162186IPR000571Zinc finger, CCCH-type
SMARTSM003562.8162185IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MEGLCAELHH HKFHPSHQLY KKSLRDIDIP PRKLLSRRAT LSSIDHVVSD VQFMDSPKSE  60
SDAQFQKFLP YNSLDDDDDA DPYSSDHFRM YEFKVRRCTR SRSHDWTDCP FAHPGEKARR  120
RDPRRFHYSG TVCSEFRKGN CSRGDNCEFA HGVFECWLHP TRYRTEACKD GKNCKRKICF  180
FAHTPRQLRV LPPGCYESGS SPKNLNSEKK YRNLNHCCVF CHSVSASPTS TLIGMSHISP  240
PMSPSLSPPL SPANRNQFSS PISRYSERFG SVEASSSGMC QLDPSGLMSY KDALTELVSS  300
LEAMNVNHEP NSSAAASTHS HSVNFDGNLP WLDVNFNNSS YDDQQQFLLS PSTPSPSPIS  360
NSRTKFYARE FPSASPVSSS RLSFVEELNN NNGTNRFYSD NGLSGGPDLG WVNDLLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g053750.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243370.10.0zinc finger CCCH domain-containing protein 2
TrEMBLA0A3Q7I8Z80.0A0A3Q7I8Z8_SOLLC; Uncharacterized protein
STRINGSolyc07g053750.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105952125
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-77C3H family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]