PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g053740.1.1
Common NameLOC101249381
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 226aa    MW: 24087.2 Da    PI: 9.7673
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g053740.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.72.2e-212372255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAaka++aa+++++g
  Solyc07g053740.1.1 23 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDAAAREFRG 72
                        6********.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-222381IPR016177DNA-binding domain
PfamPF008471.1E-142372IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-322380IPR001471AP2/ERF domain
CDDcd000181.03E-192380No hitNo description
PROSITE profilePS5103224.1972380IPR001471AP2/ERF domain
SMARTSM003806.8E-392386IPR001471AP2/ERF domain
PRINTSPR003672.3E-112435IPR001471AP2/ERF domain
PRINTSPR003672.3E-114662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAVKDKAVKG GNVKVNHGVK EVHYRGVRKR PWGRYAAEIR DPGKKSRVWL GTFDTAEEAA  60
KAYDAAAREF RGPKAKTNFP FPAEMNNVGN NNSQSPCGSS TVESSSGETV VHAPNTRHAP  120
LELDLTRRLG AAAEGGRGGV GYPILHQQPT VAVLPNGQPV LLFDSMWRPG VVSRPYQVVP  180
ATMEFAGVGA GVVTSVSDSS SVVEEKHYGK KGLDLDLNLA PPMEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-212381261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-212381564ATERF1
3gcc_A2e-212381564ATERF1
5wx9_A1e-201885977Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.55710.0callus| flower| fruit| leaf| root| seed| trichome
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, mostly in root tip, lateral root tips, cortex and vascular tissues. {ECO:0000269|PubMed:10945353}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g053740.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0141690.0Lycopersicon esculentum clone 133306F, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243371.11e-165ethylene-responsive transcription factor 4
SwissprotQ9LW491e-104ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A3Q7HF921e-164A0A3Q7HF92_SOLLC; Uncharacterized protein
STRINGSolyc07g053740.1.11e-165(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-25erf domain protein 9
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]