PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g053450.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 285aa    MW: 32720.3 Da    PI: 6.1942
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g053450.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.32.5e-11180224549
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                         kr +r   NR +A+rsR RK+++i eLe+ v +L+ae + L  ++
  Solyc07g053450.2.1 180 KRIKRILANRQSAQRSRVRKLQYISELERSVTTLQAEVSVLSPRV 224
                         899*********************************988776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.7E-13176240IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.576178230IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.1E-13180231No hitNo description
SuperFamilySSF579591.37E-11180234No hitNo description
PfamPF001709.0E-10180224IPR004827Basic-leucine zipper domain
CDDcd147037.29E-22181231No hitNo description
PROSITE patternPS000360183198IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAHLPPRAPN MTQNWPNFSP HQKIETITIS HHHHQNNPSW VDEFLDFSSS KRGSHRRSIS  60
DSIAFLEAPM VEECRIIRLS SSGTRTEFDR FDDDQLMSMF NDEDTANNNE RNSIPSSPSD  120
HNSINYEEKK LILHVEEQQQ QLKIEPEEVE SSCKSDNEQN AAADHDDHVD NSSEKIIDPK  180
RIKRILANRQ SAQRSRVRKL QYISELERSV TTLQAEVSVL SPRVAFLDHQ RLVLNVDNSV  240
LKQRIAALAQ DKIFKDVHSS RSIEERNREV KGNILPTELK EDGK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.167990.0fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in vascular tissues of leaves, stems and siliques, anthers, filaments, tapetum, mature pollen grains, pistil vascular tissues and papillar cells, and funiculi. {ECO:0000269|PubMed:19449183}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269|PubMed:17719007, ECO:0000269|PubMed:19449183}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g053450.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103600.0Solanum lycopersicum chromosome 7 clone C07HBa0184G23, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243399.10.0basic leucine zipper 61
SwissprotF4IN232e-86BZP34_ARATH; Basic leucine zipper 34
TrEMBLA0A3Q7I8Q90.0A0A3Q7I8Q9_SOLLC; Uncharacterized protein
STRINGSolyc07g053450.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17752465
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42380.25e-88bZIP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]