PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g053240.2.1
Common NameLOC101268411
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 250aa    MW: 28930 Da    PI: 6.4195
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g053240.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT+eEd +l+ +++++G+ +W+  +++ g+ R++k+c++rw +yl
  Solyc07g053240.2.1 14 KGTWTPEEDRKLAAYITKYGSWNWRQLPKYAGLARCGKSCRLRWMNYL 61
                        799*******************************************97 PP
2Myb_DNA-binding61.51.8e-1967110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T+eEde+++++++qlG++ W+tIa++++ gR+++++k++w++
  Solyc07g053240.2.1  67 RGNYTKEEDEIILNLHAQLGNK-WSTIASHLP-GRSDNEIKNHWHT 110
                         899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.937961IPR017930Myb domain
SuperFamilySSF466892.11E-3011108IPR009057Homeodomain-like
SMARTSM007174.6E-111363IPR001005SANT/Myb domain
PfamPF002491.6E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-231568IPR009057Homeodomain-like
CDDcd001678.70E-91661No hitNo description
PROSITE profilePS5129426.45462116IPR017930Myb domain
SMARTSM007171.4E-1766114IPR001005SANT/Myb domain
PfamPF002491.2E-1667110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2669115IPR009057Homeodomain-like
CDDcd001671.22E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MVRTPCHDEH GRKKGTWTPE EDRKLAAYIT KYGSWNWRQL PKYAGLARCG KSCRLRWMNY  60
LRPNVKRGNY TKEEDEIILN LHAQLGNKWS TIASHLPGRS DNEIKNHWHT TVKKRADYNS  120
SEGSKKCNNK KSESDITKRK SNVENQNAIG DNNNNNNTMH ENVILENSEW SSSEDLSSID  180
YQQDIFQEEL ANLEDITSGS FWTQPFEVDT KIDFVAPSID YCGLICPPSP FISHEFLSSF  240
DLDHYDYNW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30141177109B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.89600.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO56043810.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g053240.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243822.20.0transcription factor WER-like
TrEMBLA0A3Q7HBV80.0A0A3Q7HBV8_SOLLC; Uncharacterized protein
STRINGSolyc07g053240.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.15e-55myb domain protein 15
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]