PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g053230.2.1

Common Name

LOC101262326

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 252aa MW: 29139.5 Da PI: 7.4676

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g053230.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	2.9e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +++++G+ +W+ +++ g+ R++k+c++rw +yl Solyc07g053230.2.1 14 KGTWTPEEDRKLAAYITKYGSWNWRQLPKYAGLARCGKSCRLRWMNYL 61 799*******************************************97 PP
2	Myb_DNA-binding	59.2	9.3e-19	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eEde+++++++qlG++ W++Ia +++ gR+++++k++w++ Solyc07g053230.2.1 67 RGNYTKEEDEIILNLHAQLGNK-WSAIAIHLP-GRSDNEIKNHWHTT 111 899*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.899	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	8.3E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	4.6E-11	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-14	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-23	15	68	IPR009057	Homeodomain-like
CDD	cd00167	1.31E-8	16	61	No hit	No description
PROSITE profile	PS51294	26.793	62	116	IPR017930	Myb domain
SMART	SM00717	1.9E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.59E-11	69	112	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.5E-26	69	115	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MVRTPCRDEN GRKKGTWTPE EDRKLAAYIT KYGSWNWRQL PKYAGLARCG KSCRLRWMNY 60 LRPNVKRGNY TKEEDEIILN LHAQLGNKWS AIAIHLPGRS DNEIKNHWHT TLKKRAHYNS 120 SEVSKKCNKK RSESNITKRK SNVENQNASA NNINNNMHEN IVLESSEWSP NESSSEALSS 180 IDYQQDIFQE ELANLEEITS GSFWTQPFEV DTKIDFVAPP IDYCGLVCPP SPFIPHEFLS 240 SFDFDDCNNY W*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-29	14	116	7	108	B-MYB
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.8960	0.0	flower

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	5604381	0.0

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g053230.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025887851.1	0.0	transcription factor MYB15-like
TrEMBL	A0A3Q7HEC1	0.0	A0A3Q7HEC1_SOLLC; Uncharacterized protein
STRING	Solyc07g053230.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	1e-54	myb domain protein 15

Link Out ? help Back to Top
Phytozome	Solyc07g053230.2.1
Entrez Gene	101262326

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]