PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g052960.1.1
Common NameLOC101268586
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 430aa    MW: 48611.2 Da    PI: 5.2807
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g052960.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS306.37e-94374161373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsP 89 
                         l++lLl+cA a++++d +laq++++ l++las++gdp+qRl++ f++AL +r +r    +y   +  + s++ + + +++++l  ++++ P
  Solyc07g052960.1.1  37 LEKLLLHCASALENNDVTLAQQVMWVLNNLASSNGDPNQRLTSWFLRALISRASR----VYPNATNLHGSSNLERRLMSVTELagYVDLIP 123
                         5799***************************************************....55444444444333455555555577****** PP

                GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfe 177
                         +++f++ + N+ I++a+e++++vHi+Df+i++++QWp+L++a+a+RpegppslRi + +   ++    + + ee+g+rLa+fA+  +vpfe
  Solyc07g052960.1.1 124 WHRFGFCASNSVIYKAIERQTKVHILDFSITHCMQWPTLIDAIAKRPEGPPSLRISVPSWRPQVpplLNVSSEEVGQRLANFAKFRDVPFE 214
                         ********************************************************988755558899999******************** PP

                GRAS 178 fnvl....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadh.nsesFlerfleal 261
                         f+v+    +   l++l++++L+++ +Eal+Vn++  l +l+d+++       rd +L+ vk+l+P +v++v++++d+ n +++  r++ ++
  Solyc07g052960.1.1 215 FHVIedlnYDMFLSQLNPSTLQIRDDEALVVNCQNWLRYLHDDEQIKGAlsSRDIFLDRVKDLNPCIVTIVDEDCDLgNPTTLTSRIATCF 305
                         ***9766444467889*******************99999876543333457*************************9999********** PP

                GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrv 351
                         +y +  fd+le+ lp++s++r  +E+e +g +i+n++  eg++r+er e+ +k ++r+e++G+ +vp+se++ k++k+ll +++ ++g++ 
  Solyc07g052960.1.1 306 NYLWIPFDALETFLPKDSKQRLDYEAE-IGHKIENIIGFEGNQRIERLESCNKFSQRMENSGYMSVPFSEETIKEVKSLLDEHAsGWGMK- 394
                         ***************************.********************************************************666555. PP

                GRAS 352 eeesgslvlgWkdrpLvsvSaW 373
                         +ee++ lvl+Wk+++ v +++W
  Solyc07g052960.1.1 395 KEEHDMLVLTWKGHNSVYATSW 416
                         45677899******99999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.70311397IPR005202Transcription factor GRAS
PfamPF035142.4E-9137416IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MNSTTIPLQN PSFFNNSQSS LAGALQGCIG SLDGACLEKL LLHCASALEN NDVTLAQQVM  60
WVLNNLASSN GDPNQRLTSW FLRALISRAS RVYPNATNLH GSSNLERRLM SVTELAGYVD  120
LIPWHRFGFC ASNSVIYKAI ERQTKVHILD FSITHCMQWP TLIDAIAKRP EGPPSLRISV  180
PSWRPQVPPL LNVSSEEVGQ RLANFAKFRD VPFEFHVIED LNYDMFLSQL NPSTLQIRDD  240
EALVVNCQNW LRYLHDDEQI KGALSSRDIF LDRVKDLNPC IVTIVDEDCD LGNPTTLTSR  300
IATCFNYLWI PFDALETFLP KDSKQRLDYE AEIGHKIENI IGFEGNQRIE RLESCNKFSQ  360
RMENSGYMSV PFSEETIKEV KSLLDEHASG WGMKKEEHDM LVLTWKGHNS VYATSWVIVS  420
PPHMDMSSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B8e-573841688472Protein SHORT-ROOT
5b3h_B2e-573841634418Protein SHORT-ROOT
5b3h_E2e-573841634418Protein SHORT-ROOT
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.126680.0fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g052960.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243434.10.0scarecrow-like protein 32
TrEMBLA0A3Q7HE770.0A0A3Q7HE77_SOLLC; Uncharacterized protein
STRINGSolyc07g052960.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103032227
Representative plantOGRP24991534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-121GRAS family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]