PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g052700.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 191aa    MW: 21334.2 Da    PI: 7.4119
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g052700.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.18.7e-17252151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+ie+++ r+  +s+R+  i KK +EL v C+++v +++fs++g+l +yss
  Solyc07g052700.2.1  2 KKIEDSTSRKQFYSNRKDSIVKKSNELAVVCGTDVGLLMFSPSGQLTTYSS 52
                        68***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-11153IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-17167IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.292154IPR002100Transcription factor, MADS-box
PfamPF003191.3E-16350IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-61631IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-63152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MKKIEDSTSR KQFYSNRKDS IVKKSNELAV VCGTDVGLLM FSPSGQLTTY SSKESIEDIM  60
IEAMNKSVNP RPIPNLNEQL LMQSLKQSKS EGQMVGKIAI AEAHEKKLNE LKETLREAQQ  120
KIRYCNPQVE NISSVQEAEA YEQFLRSNME QIQQSKAKLL GVQGLVHRNE YPAVNTEDTA  180
AAGTSSGWMF *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.73480.0floral bud| fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g052700.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2433582e-41Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-30f7 map 1, complete sequence
GenBankAC2467542e-41Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-59a11 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243447.11e-139agamous-like MADS-box protein AGL66
TrEMBLA0A3Q7HBW81e-138A0A3Q7HBW8_SOLLC; Uncharacterized protein
STRINGSolyc07g052700.2.11e-139(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52921836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.12e-19AGAMOUS-like 66
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]