PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc07g049490.1.1 | ||||||||
Common Name | LOC101265453 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 199aa MW: 22041.6 Da PI: 5.8712 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.4e-20 | 25 | 76 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++ +gr++AeIrdp + +r++lg+f+tae+Aa+a++ a+++l+g+ Solyc07g049490.1.1 25 PRYRGVRKRP-WGRFAAEIRDPI----KkTRVWLGTFDTAEDAARAYDDAARALRGA 76 68********.**********72....35*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.80E-20 | 25 | 82 | No hit | No description |
Pfam | PF00847 | 8.7E-14 | 25 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-22 | 26 | 84 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.8E-36 | 26 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.222 | 26 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-32 | 26 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-11 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-11 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MRHRKSSELK RPGSDLLQQP DADPPRYRGV RKRPWGRFAA EIRDPIKKTR VWLGTFDTAE 60 DAARAYDDAA RALRGAKAKT NFNMLPLTDD PYDDEFELFP NPRPASSSMS STLESSSGPR 120 GGSSSKVTRM KIPRPVRPME ECRSDCDSSS SVVDDRCDVD QTSSFVTKQP LPFDLNLPPP 180 SDNDGVDVDD LHVTALCL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-21 | 22 | 82 | 10 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.13685 | 0.0 | fruit| leaf| trichome |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc07g049490.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209585 | 4e-06 | Solanum lycopersicum DNA sequence from clone LE_HBa-26C13 on chromosome 12, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004243505.1 | 1e-142 | ethylene-responsive transcription factor 3 | ||||
Swissprot | Q9LDE4 | 1e-31 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | A0A3Q7I7N7 | 1e-137 | A0A3Q7I7N7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g049490.1.1 | 1e-142 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13779 | 11 | 13 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 4e-20 | ethylene response factor 7 |
Link Out ? help Back to Top | |
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Phytozome | Solyc07g049490.1.1 |
Entrez Gene | 101265453 |
Publications ? help Back to Top | |||
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