PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g047960.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 414aa    MW: 45204.8 Da    PI: 7.6279
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g047960.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.31.9e-29138195260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +DgynWrKYGqK v+g+ef+rsYY+Ct  +C +kk+vers+ d+++++i+Y  +H+h+k
  Solyc07g047960.2.1 138 EDGYNWRKYGQKLVRGNEFTRSYYKCTRLNCLAKKQVERSQ-DGHITNIHYIATHEHPK 195
                         7****************************************.***************85 PP
2WRKY103.79.8e-33314372159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dgy+WrKYGqK vkg+++prsYYrC+sagCp+kk+vers+++pk v+++Yeg+H+h+
  Solyc07g047960.2.1 314 VNDGYRWRKYGQKFVKGNPNPRSYYRCSSAGCPAKKHVERSSHNPKSVITVYEGQHDHD 372
                         58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-25132196IPR003657WRKY domain
PROSITE profilePS5081121.448132196IPR003657WRKY domain
SuperFamilySSF1182904.18E-23135196IPR003657WRKY domain
SMARTSM007742.5E-30137195IPR003657WRKY domain
PfamPF031063.8E-22138194IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-34300374IPR003657WRKY domain
SuperFamilySSF1182906.41E-29306374IPR003657WRKY domain
PROSITE profilePS5081135.427309374IPR003657WRKY domain
SMARTSM007741.1E-37314373IPR003657WRKY domain
PfamPF031062.6E-26315371IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MSQSNQKDSS LSNVPEKDAE NVHQKKGLES EGGASESSRV SVLPKKEPYI ISCKSDSPVK  60
DGNISLVPGK ASDSSQQIQS QKMEEVVSQP HQEQVTSSPM AENALCKLQS RRNPDTSVQD  120
LPSDQGVTPF SEPEKPSEDG YNWRKYGQKL VRGNEFTRSY YKCTRLNCLA KKQVERSQDG  180
HITNIHYIAT HEHPKPLSSP QISPELVVPS ETRRPDMSTG TPHEGEKSTA LGEACQSIVP  240
SESLSSATVV SAGGSSQDTV LKPLKPGDEG DNNGGRNSKR RKKEVPTSDD MTPPMKSPSE  300
SRHIVQTSSE VDVVNDGYRW RKYGQKFVKG NPNPRSYYRC SSAGCPAKKH VERSSHNPKS  360
VITVYEGQHD HDIPPSRTVI QNTAEADSNT TRISGESTSE SGENKHVVHI GAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-34301375175WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.115750.0fruit| leaf| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed to similar levels in root and flower, to a somewhat lower level in stem and to low levels in leaf and siliques. {ECO:0000269|PubMed:8972846}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g047960.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243546.10.0WRKY transcription factor 1
RefseqXP_019070419.10.0WRKY transcription factor 1
SwissprotQ9SI376e-68WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A3Q7HAR30.0A0A3Q7HAR3_SOLLC; Uncharacterized protein
STRINGSolyc07g047960.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45582242
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.25e-70zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  4. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]