PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc07g043580.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 496aa MW: 54712.9 Da PI: 7.1166 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 54 | 2.9e-17 | 313 | 359 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+ellP++ +K +Ka++L +A+eY+ksLq Solyc07g043580.2.1 313 VHNLSERRRRDRINEKMKALQELLPHS-----TKTDKASMLDEAIEYLKSLQ 359 6*************************9.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 18.476 | 309 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-20 | 312 | 386 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.53E-18 | 312 | 363 | No hit | No description |
Pfam | PF00010 | 1.2E-14 | 313 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-20 | 313 | 367 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.0E-18 | 315 | 364 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010244 | Biological Process | response to low fluence blue light stimulus by blue low-fluence system | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0010928 | Biological Process | regulation of auxin mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MGFDHELVEL LWRNGEVVLH SQTHKKQPGY DPNECRQFNK HDQPTIRVAG NQTNLIQDDE 60 TVAWLNCPID DSFDKEFCSP FLSDISTNPH LGEEPDKSIR QSEDNNKVFK FDPLEINHVL 120 PQSHHSGFDP NPMPPPRFHN FGSAQQKHHI VGGDQKGVNF PPPIRSSNVQ LGGKEARSNL 180 MLQDIKEGSV MTVGSSHCGS NQVDTSRFSS SANRGLSAAM ITDYTGKISP QSDTMDRDTF 240 EPANTSSSSG RSGSSYARAC NQSTATNSQG HKRKSRDGEE PECQSKADEL ESAGGNKSAQ 300 KSGTARRSRA AEVHNLSERR RRDRINEKMK ALQELLPHST KTDKASMLDE AIEYLKSLQM 360 QLQMMWMGSG MASMMFPGVQ HYISRMGMGM GPPSVPSMHN AMHLARLPLV DPAIPLTQAA 420 PNNQAAAMCQ NSMLNQVNYQ RHLQNPNFPD QYASYMGFHP LQGASQPINI FGLGSHTAQQ 480 TQQLPHPTNS NAPAT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 317 | 322 | ERRRRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.1864 | 0.0 | fruit| leaf| root| stem| trichome |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00606 | ChIP-seq | Transfer from AT2G43010 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc07g043580.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013582 | 0.0 | Lycopersicon esculentum clone 132330F, mRNA sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001294937.1 | 0.0 | transcription factor PIF4 | ||||
Refseq | XP_019070178.1 | 0.0 | transcription factor PIF4 isoform X1 | ||||
TrEMBL | A0A3Q7H9E8 | 0.0 | A0A3Q7H9E8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g043580.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10465 | 22 | 26 | Representative plant | OGRP258 | 16 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43010.2 | 4e-48 | phytochrome interacting factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Solyc07g043580.2.1 |
Publications ? help Back to Top | |||
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