PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g040680.2.1
Common NameLOC101266046
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 357aa    MW: 40871.3 Da    PI: 5.1462
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g040680.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.42.6e-34601512102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Flkk++e+++d++++++isws+++nsfvv+d+++f+ ++Lpk+Fkh+nf+SF+RQLn+Y F+k+++++         weF+++ F+kgkk+
  Solyc07g040680.2.1  60 FLKKTFEMVDDPNTDSIISWSNSQNSFVVWDPHKFSIHLLPKHFKHNNFSSFIRQLNTYRFRKIDSDR---------WEFANEGFQKGKKH 141
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll +ikr+k+
  Solyc07g040680.2.1 142 LLINIKRRKQ 151
                         ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.0E-5456149IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.24E-3456149IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.9E-3856149IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-3060149IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-186083IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-1898110IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434099123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-18111123IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEEEKTMLID VNEKEMNVNG GVVVEVKEEP VIFINDEDDI IGDSVPKPLD GLRDVGPPPF  60
LKKTFEMVDD PNTDSIISWS NSQNSFVVWD PHKFSIHLLP KHFKHNNFSS FIRQLNTYRF  120
RKIDSDRWEF ANEGFQKGKK HLLINIKRRK QYPQLGGGGG GGAKSWVGGC CKDGTEAAEI  180
EKLKKDHNTL KMEILKLKQQ QESTDNYLAT MKERLQNSEI KQKYMVIFLA KTFHNPMFVQ  240
HLIEKVKQGK TTTVENGTKK RRLCSDENQE EYTTIKSEIQ TLFSCDESSN SPVEEQKGKG  300
NNSSPEMVSE NYILWEKLME DDMICENGAE TDKYQSEIVL ELEDLISNPS ECKCMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-235814927129Heat shock factor protein 1
5d5v_B5e-235814927129Heat shock factor protein 1
5d5v_D5e-235814927129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g040680.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4073187e-06S.lycopersicum DNA sequence from clone SL_MboI-118B3 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243750.10.0heat stress transcription factor A-2-like
TrEMBLA0A3Q7HBF90.0A0A3Q7HBF9_SOLLC; Uncharacterized protein
STRINGSolyc07g040680.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56812235
Representative plantOGRP1180756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-81heat shock transcription factor A2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]