PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g026570.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HB-other

Protein Properties

Length: 142aa MW: 16817.9 Da PI: 7.8448

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g026570.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48	2.1e-15	24	74	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ e +++Lee+Fe+++ ps+++ +L +k+gL+ +q+ WFqN+R + k Solyc07g026570.1.1 24 KYDVEKTQQLEEFFEECQRPSEDQQNQLGRKVGLDSKQIMAWFQNKRSQTK 74 577899*****************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-15	8	70	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.27E-14	12	75	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.528	16	76	IPR001356	Homeobox domain
SMART	SM00389	1.1E-8	16	80	IPR001356	Homeobox domain
CDD	cd00086	3.20E-8	23	74	No hit	No description
Pfam	PF00046	8.2E-13	24	74	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MIDSGKKQVG ESSTTPKRQR HCHKYDVEKT QQLEEFFEEC QRPSEDQQNQ LGRKVGLDSK 60 QIMAWFQNKR SQTKAKDDKL DNYTLRKENE FFRYEIMAMK EKKKNNMCPQ CDGPSIGEEE 120 RMCNLENLKT ESQRMREEVN L*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g026570.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC253668	1e-112	Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-48p11 map 7, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025887726.1	4e-93	homeobox-leucine zipper protein HDG11-like
TrEMBL	A0A3Q7HA64	6e-96	A0A3Q7HA64_SOLLC; Uncharacterized protein
STRING	Solyc07g026570.1.1	1e-101	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA18594	3	4
Representative plant	OGRP145	15	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03260.1	1e-29	homeodomain GLABROUS 8

Link Out ? help Back to Top
Phytozome	Solyc07g026570.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]