PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc07g018010.2.1 | ||||||||
Common Name | LOC101266736 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 254aa MW: 28701.9 Da PI: 4.6287 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40 | 6.9e-13 | 53 | 95 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr ++P+ + K++Ka+i + A++YI +L Solyc07g018010.2.1 53 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIEEL 95 57*********************66......***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.19E-17 | 45 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.228 | 46 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.06E-11 | 49 | 100 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-16 | 52 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-14 | 52 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-10 | 53 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 7.02E-5 | 175 | 239 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDNIGDEYKN YWETTMFLQS EELDSYFDEP ISSYYDSSSP DGSQSSMASK NIVSERNRRK 60 KLNERLFALR AVVPNISKMD KASIIKDAID YIEELHNQER RIRGEISELE SGRSSSKKNS 120 NDVEFEQDES FDSKPKRSRR FEMQYGYDSS GSTTRSPPSS SPVDVLELRV SSMGEKTVVV 180 SLTCSKRTDT MVKVCEVFES LNIKIISANI TAFSGRLLKT AFIEADEEER DLLKLRIETA 240 IASLNDPDSP MSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 9e-14 | 51 | 95 | 9 | 53 | Transcription factor MYC2 |
5gnj_B | 9e-14 | 51 | 95 | 9 | 53 | Transcription factor MYC2 |
5gnj_E | 9e-14 | 51 | 95 | 9 | 53 | Transcription factor MYC2 |
5gnj_F | 9e-14 | 51 | 95 | 9 | 53 | Transcription factor MYC2 |
5gnj_G | 9e-14 | 51 | 95 | 9 | 53 | Transcription factor MYC2 |
5gnj_I | 9e-14 | 51 | 95 | 9 | 53 | Transcription factor MYC2 |
5gnj_M | 9e-14 | 51 | 95 | 9 | 53 | Transcription factor MYC2 |
5gnj_N | 9e-14 | 51 | 95 | 9 | 53 | Transcription factor MYC2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.10247 | 1e-45 | callus| flower| fruit| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc07g018010.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC253645 | 1e-150 | Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-51e1 map 7, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004242918.1 | 0.0 | transcription factor bHLH35 | ||||
Swissprot | Q2HIV9 | 6e-86 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A3Q7H5Q1 | 0.0 | A0A3Q7H5Q1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g018010.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2923 | 24 | 51 | Representative plant | OGRP2753 | 13 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 3e-75 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc07g018010.2.1 |
Entrez Gene | 101266736 |
Publications ? help Back to Top | |||
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