PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g017310.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 365aa MW: 40999.2 Da PI: 4.6637

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g017310.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	32.6	1.7e-10	52	80	27	55
G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55 A Pk++ elm+++ L+ +++ SHLQkYRl Solyc07g017310.1.1 52 ACPKKVHELMNMPELSKKQISSHLQKYRL 80 89**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.17E-5	51	84	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.8E-9	52	80	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.3E-9	52	84	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MKVNSIEVAL GGLRSSGLSF DLLLTDIHML KMDVFQFQQD IAKEFDISIC YACPKKVHEL 60 MNMPELSKKQ ISSHLQKYRL TLDKKPNPKV VFDSSKTTSG NANQLSITTD NISVLAPQVM 120 TKNLNNVGPD TELDLRNFMS YYEKDRNFSN ILSRHLNQKP YKMQGNHEGI NADGISLQLG 180 NVLQNSNLEQ GKYASITAEE RPLHSSTVSP NLSLQQEIYG GVTAEDALFD HLDVPSNSEI 240 RSGDYESFIA EDWLFLNSLF LDHELEQANY EGLTTKEGSL QLCNDPPNTT LEDLAPDEYN 300 IECANGFWDN AKVVQIGVGR KSMMCAQPKE KFDFVWNFLL PNSAMMKRIG RGLFQNMEDG 360 FDGE*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MKVNSIEVAL GGLRSSGLSF DLLLTDIHML KMDVFQFQQD IAKEFDISIC YACPKKVHEL  60
MNMPELSKKQ ISSHLQKYRL TLDKKPNPKV VFDSSKTTSG NANQLSITTD NISVLAPQVM  120
TKNLNNVGPD TELDLRNFMS YYEKDRNFSN ILSRHLNQKP YKMQGNHEGI NADGISLQLG  180
NVLQNSNLEQ GKYASITAEE RPLHSSTVSP NLSLQQEIYG GVTAEDALFD HLDVPSNSEI  240
RSGDYESFIA EDWLFLNSLF LDHELEQANY EGLTTKEGSL QLCNDPPNTT LEDLAPDEYN  300
IECANGFWDN AKVVQIGVGR KSMMCAQPKE KFDFVWNFLL PNSAMMKRIG RGLFQNMEDG  360
FDGE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g017310.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC253659	1e-146	Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-33k4 map 7, complete sequence
GenBank	AC253666	1e-146	Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-48d7 map 7, complete sequence
GenBank	AC253989	1e-146	Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-46l4 map 7, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027774110.1	1e-149	two-component response regulator ARR14-like
STRING	Solyc07g017310.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15814	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.1	2e-07	response regulator 1

Link Out ? help Back to Top
Phytozome	Solyc07g017310.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]