PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g006750.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 425aa    MW: 48456.9 Da    PI: 9.4647
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g006750.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.6e-1572120148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+W++eEd  l+ ++++ G+g +W + ++++g++R++k+c++rw++yl
  Solyc07g006750.2.1  72 KGPWSPEEDATLKAYIEENGTGnNWIALPQKIGLKRCGKSCRLRWLNYL 120
                         79*********************************************97 PP
2Myb_DNA-binding38.62.5e-12127169246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +T+eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Solyc07g006750.2.1 127 GGFTEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 169
                         569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.80867120IPR017930Myb domain
SuperFamilySSF466895.43E-2669167IPR009057Homeodomain-like
SMARTSM007179.0E-1271122IPR001005SANT/Myb domain
PfamPF002492.8E-1472120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-2473127IPR009057Homeodomain-like
CDDcd001675.61E-874120No hitNo description
PROSITE profilePS5129422.109121175IPR017930Myb domain
SMARTSM007172.3E-11125173IPR001005SANT/Myb domain
PfamPF002497.5E-11127169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-23128175IPR009057Homeodomain-like
CDDcd001671.28E-7129169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0035987Biological Processendodermal cell differentiation
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000021Biological Processregulation of ion homeostasis
GO:2000067Biological Processregulation of root morphogenesis
GO:0048226Cellular ComponentCasparian strip
GO:0000975Molecular Functionregulatory region DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MRRLFWFFKS MTSLIIHSFS TYKIKSSLLK IFQINNYHKI FQSIKKKKFG SNKKFKKNMG  60
RAPCCDKANV KKGPWSPEED ATLKAYIEEN GTGNNWIALP QKIGLKRCGK SCRLRWLNYL  120
RPNIKHGGFT EEEDNIICSL YISIGSRWSI IAAQLPGRTD NDIKNYWNTR LKKKLLGKRK  180
QSQMNRLLLA NGGQDLKDIN GLEENPLLQN LSNSALERLQ LHMQLQTLQN PLSFYNNPSL  240
WPKLTPLQQK MIQTLQSNGL NENQSPLYTP INPSENHAHE LGQKVGINEF ASTKVNVEVE  300
KSIPINDFNN NQKNVLDTNI GQENAKEIQI QGVQGFTQLE IDDLILNNKG SIGLNMHSEN  360
QQIGSEFDCF KEMDDGSRDN LAWWSNDFDT NTASSSNSWG SSSNILQNSH EGMYQDYALG  420
YNLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-22721757108B-MYB
1h88_C2e-217217558159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-217217558159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In roots, expressed in endodermal cells from the late elongation zones to the differentiation zone and, to a lower extent, in endodermal cells of the meristematic zone. {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
UniprotTISSUE SPECIFICITY: Expressed in leaves, roots (endodermis-specific) and seedlings. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322, ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g006750.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243013.10.0transcription factor MYB36
SwissprotQ9FKL21e-106MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A3Q7H7180.0A0A3Q7H718_SOLLC; Uncharacterized protein
STRINGSolyc07g006750.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-100myb domain protein 36
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]