PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g005650.2.1
Common NameLOC101243902
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 514aa    MW: 56293.5 Da    PI: 6.8599
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g005650.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.53.7e-25203259259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +DgynWrKYGqK+vk+ + +rsYYrCt+++C++kk +e+s++ ++v+ei+Y+ +Hnh+
  Solyc07g005650.2.1 203 RDGYNWRKYGQKQVKSPQGSRSYYRCTHSECCAKK-IECSDHTNRVMEIIYRTQHNHD 259
                         7********************************98.*********************7 PP
2WRKY95.53.6e-30375432259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vkg+++pr+YYrCtsagCpv+k++er  + +++++itY+g H+h+
  Solyc07g005650.2.1 375 SDGYRWRKYGQKIVKGNPHPRNYYRCTSAGCPVRKHIERVLDTTSALTITYKGVHDHD 432
                         7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-22198261IPR003657WRKY domain
SuperFamilySSF1182907.19E-20201261IPR003657WRKY domain
SMARTSM007741.2E-22202260IPR003657WRKY domain
PROSITE profilePS5081118.452204261IPR003657WRKY domain
PfamPF031069.6E-18204259IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.2E-31359434IPR003657WRKY domain
SuperFamilySSF1182909.02E-27368434IPR003657WRKY domain
PROSITE profilePS5081131.33369434IPR003657WRKY domain
SMARTSM007747.3E-34374433IPR003657WRKY domain
PfamPF031061.1E-23376431IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MDDENESSKS AGLKNSNLEE EEEDKISNKI ENSSVHNDEN GDDDRVIDGS SGAESLRESK  60
TGALISETLA HPNAESSVQI EIDGQSEFDS EFSPSYQLSE VPVEYELPSF GFSEKIKDRI  120
SVTKPGTLNA QARTEHQRRV PDAASSLELS SLSVAQSISS VPSATLAERR SAAAVNCSTG  180
EVVKQSSDAQ VLALVPVLKR PTRDGYNWRK YGQKQVKSPQ GSRSYYRCTH SECCAKKIEC  240
SDHTNRVMEI IYRTQHNHDP PPRVNCPRES KSALLSSPTN GKSIIAHPRR NSIETVVSPL  300
NENLQESLPI AETANQDSGG SDTDTEITIR EEHRDEAGQK KRSRKSDTSC LESVSKPGKK  360
PKLVVHAACD VGISSDGYRW RKYGQKIVKG NPHPRNYYRC TSAGCPVRKH IERVLDTTSA  420
LTITYKGVHD HDMPVPKKRH GPPSAPLIAA TAPASVTTMH ANKPEPLQHQ KSTTQWSVDK  480
EGELTGEKLD VGGEKAMESA RTLLSIGFEI KPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-26362434274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g005650.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242596.10.0probable WRKY transcription factor 32
SwissprotP595831e-111WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A3Q7HZG60.0A0A3Q7HZG6_SOLLC; Uncharacterized protein
STRINGSolyc07g005650.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91892127
Representative plantOGRP10318610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-113WRKY DNA-binding protein 32
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]