PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc07g005140.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ARR-B | ||||||||
Protein Properties | Length: 666aa MW: 73325.8 Da PI: 7.2618 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.5 | 1.3e-27 | 211 | 263 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +r++W+ eLH++Fv av qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl Solyc07g005140.2.1 211 ARVVWSIELHRKFVAAVGQL-GIEKAVPKRILDLMNVDGLTRENVASHLQKYRL 263 79******************.********************************8 PP | |||||||
2 | Response_reg | 81 | 4e-27 | 28 | 136 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl vdD+p+ ++ll +l+k +y +v+++++++ al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+++ +++ + Solyc07g005140.2.1 28 VLAVDDDPICLKLLDGLLRKCQY-QVTTTSQARMALKMLRENRdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDTKLVRKG 116 799********************.***************999889*******************87754.558****************** PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 ++ Ga d+l+Kp+ +eel++ Solyc07g005140.2.1 117 IDHGACDYLVKPVRIEELRN 136 ******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.1E-158 | 4 | 652 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 2.6E-43 | 25 | 160 | No hit | No description |
SuperFamily | SSF52172 | 4.98E-36 | 25 | 153 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 8.0E-33 | 26 | 138 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.897 | 27 | 142 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.5E-24 | 28 | 137 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.20E-29 | 29 | 142 | No hit | No description |
PROSITE profile | PS51294 | 12.655 | 207 | 266 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-18 | 207 | 267 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-28 | 207 | 268 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-23 | 211 | 263 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 666 aa Download sequence Send to blast |
MTVEEIRGNM SGGERGNNYD NFPIGMRVLA VDDDPICLKL LDGLLRKCQY QVTTTSQARM 60 ALKMLRENRD RFDLVISDVH MPDMDGFKLL ELVGLEMDLP VIMLSANSDT KLVRKGIDHG 120 ACDYLVKPVR IEELRNIWQH VIRKKKVEPK SQSKSNDQDK SYQVSGESGR GQSPTGNVYP 180 NGKCNKKRKD EEDENDENGN DNEDPTTQKR ARVVWSIELH RKFVAAVGQL GIEKAVPKRI 240 LDLMNVDGLT RENVASHLQK YRLYLKRINS VQTQQANMVA ALGGRDYVRM GSLDGLGDFR 300 TLGGSGRYTH AALSSYSSGG MLGRLNSAAG LSVRNLAASQ LLQPSHGQNL SNSVNAFTKL 360 NPSIPPASQN ASLFQGIPAS LELDQLQQSK SSAHIPLDES RLLTTDVLGC SNNSLPNNPM 420 LLPGNPQQPL TGGGFGNQHS QNITPFSSDS FNTGVNGSSN FLEHGRCNDW QNSVQLSKFQ 480 SNSFPLTESF INSHLPQISA REAAAHLQNS PLDFTSTTSV SPPFEDSRGE IQFRQSMASA 540 VQSMNQTPSQ AWADNKQQYS HNSNNTFGNN LSSQVPNDGS MASLSHSMNQ NNENFGRRMD 600 MSLIGRSSGG SSTLVQHTEH EKLTPDSRTR SNEEYLLEPT KQQVGFSPQG YDSLDDLMTA 660 MKRRG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-24 | 206 | 269 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc07g005140.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004242565.1 | 0.0 | two-component response regulator ORR24 isoform X1 | ||||
Swissprot | B8AEH1 | 1e-136 | ORR23_ORYSI; Two-component response regulator ORR23 | ||||
TrEMBL | M0ZUD2 | 0.0 | M0ZUD2_SOLTU; Two-component response regulator | ||||
STRING | Solyc07g005140.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2258 | 24 | 58 | Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-114 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Solyc07g005140.2.1 |
Publications ? help Back to Top | |||
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