PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g082590.1.1 | ||||||||
Common Name | PTI6, SlCRF1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 27912.9 Da PI: 4.7271 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.8 | 8.7e-21 | 96 | 146 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +grW+AeIrdp+ r kr++lg+++t+eeAa +++a+ kl+g Solyc06g082590.1.1 96 KKFRGVRQRP-WGRWAAEIRDPT----RgKRVWLGTYDTPEEAAVVYDKAAVKLKG 146 59********.**********84....35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 7.4E-116 | 4 | 248 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 1.90E-32 | 96 | 154 | No hit | No description |
Pfam | PF00847 | 4.5E-13 | 97 | 146 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-39 | 97 | 160 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-23 | 97 | 156 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.0E-31 | 97 | 155 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.263 | 97 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.1E-10 | 98 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.1E-10 | 120 | 136 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MTENSVPVIK FTQHIVTTNK HVFSEHNEKS NSELQRVVRI ILTDADATDS SDDEGRNTVR 60 RVKRHVTEIN LMPSTKSIGD RKRRSVSPDS DVTRRKKFRG VRQRPWGRWA AEIRDPTRGK 120 RVWLGTYDTP EEAAVVYDKA AVKLKGPDAV TNFPVSTTAE VTVTVTETET ESVADGGDKS 180 ENDVALSPTS VLCDNDFAPF DNLGFCEVDA FGFDVDSLFR LPDFAMTEKY YGDEFGEFDF 240 DDFALEAR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-21 | 96 | 155 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 6e-21 | 96 | 155 | 4 | 64 | ATERF1 |
3gcc_A | 6e-21 | 96 | 155 | 4 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 81 | 96 | KRRSVSPDSDVTRRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.3574 | 0.0 | callus| cell culture| fruit| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g082590.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU164419 | 4e-59 | Solanum lycopersicum DNA-binding protein Pti6 gene, promoter and partial cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001233991.1 | 0.0 | pathogenesis-related genes transcriptional activator PTI6 | ||||
Swissprot | O04682 | 0.0 | PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | M1CZU0 | 1e-152 | M1CZU0_SOLTU; Uncharacterized protein | ||||
STRING | Solyc06g082590.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5227 | 21 | 37 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 8e-36 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g082590.1.1 |
Entrez Gene | 544043 |
Publications ? help Back to Top | |||
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