PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g082530.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 654aa MW: 74443.3 Da PI: 6.1883 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 353.4 | 3.5e-108 | 278 | 649 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 ++lL++cAea +s +++ ++L++++e++sp gd++ Rla +f++AL+ar a+ ++++ +++++ + ++ l+a++++ ++P+ + Solyc06g082530.1.1 278 TSLLTRCAEAAASYNTKTFIEVLNKIREHSSPFGDATSRLAYCFANALEARFAG-GDTTW--ITSKKI---SAADFLKAYQVYITACPFKR 362 689***************************************************.33222..333333...4899**************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 +s++ aN+ I + +++++rvHiiDf+i +G+QWp++++ ++ Rp+gpp+l+iTg++ p++g +e++eetg+rL++++++++vpfe+++ Solyc06g082530.1.1 363 MSNIFANKSIAKLTSESSRVHIIDFGILYGFQWPCIIHGISLRPGGPPKLKITGIDFPQPGfrPAERVEETGRRLKEYCKRFDVPFEYKA- 452 ************************************************************9*****************************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 +ak+++++++e+L+++++E ++Vn+ ++l+++lde+v++++ +rd+vL+l+k+++P+ +v+ +a +n++ F +rf eal ++s+ f Solyc06g082530.1.1 453 IAKKWDEIKVEDLDIDRDEIVVVNCLYRLKNVLDETVEVTHnnknPRDAVLNLIKEINPHYFVHGIVNAMYNASFFTTRFREALFHFSSQF 543 7*********************************999876666679********************************************* PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359 d++ea++pre+e r++ E+e++gr+i+nv+a egaer+er e+++kW++r + aGF+++pl+++++k++k+ +++++ + v+e+s++++ Solyc06g082530.1.1 544 DMFEATMPREDEGRMMFEQEVFGRDIMNVIASEGAERVERPESYKKWSMRNQIAGFRQLPLDQDIVKEVKTKVKMFYHGDFLVDEDSNWML 634 *****************************************************************************666*********** PP GRAS 360 lgWkdrpLvsvSaWr 374 +gWk+r ++++S+W+ Solyc06g082530.1.1 635 QGWKGRIMYALSVWE 649 **************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.908 | 251 | 629 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-105 | 278 | 649 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 654 aa Download sequence Send to blast |
MNTSSHFPGD HRSSDGFEFG HCCGGGGDND VVCFSSRRSS EEEVVIGSGS DRTVVQGDYF 60 DGVFKYIHQM LMEDQEDLEN RPCMFQDCIA LQAAEKSFYD ALNPPTIHRD FVDDSGNQFQ 120 DDYCDAVNHQ FAETTFNSDL DNDQFSFFYN TNTICHGVGD GISVVNGDTS NAINYHQKGE 180 NENKKHTRDE NSESSKGRKS KQLASNGTED GKTEEHYDKA LLCPGLNPSF YENRSKSATA 240 WDNAAWDKQK SSHIKQSKRG RPRGSKKGVK TNEVVDLTSL LTRCAEAAAS YNTKTFIEVL 300 NKIREHSSPF GDATSRLAYC FANALEARFA GGDTTWITSK KISAADFLKA YQVYITACPF 360 KRMSNIFANK SIAKLTSESS RVHIIDFGIL YGFQWPCIIH GISLRPGGPP KLKITGIDFP 420 QPGFRPAERV EETGRRLKEY CKRFDVPFEY KAIAKKWDEI KVEDLDIDRD EIVVVNCLYR 480 LKNVLDETVE VTHNNKNPRD AVLNLIKEIN PHYFVHGIVN AMYNASFFTT RFREALFHFS 540 SQFDMFEATM PREDEGRMMF EQEVFGRDIM NVIASEGAER VERPESYKKW SMRNQIAGFR 600 QLPLDQDIVK EVKTKVKMFY HGDFLVDEDS NWMLQGWKGR IMYALSVWEP IHK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-46 | 277 | 648 | 5 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g082530.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004242547.2 | 0.0 | scarecrow-like protein 9 | ||||
Swissprot | Q9XE58 | 1e-161 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A3Q7H181 | 0.0 | A0A3Q7H181_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g082530.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 | Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-163 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g082530.1.1 |
Publications ? help Back to Top | |||
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