PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g082510.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 468aa MW: 52597.8 Da PI: 8.7709 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.9 | 8.7e-12 | 418 | 465 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +W+ E+e l +v+q+G g+Wk I +t + Rt+ ++k++w+++ Solyc06g082510.2.1 418 KWSSLEEETLRAGVQQYGIGNWKFILNTYPnifSARTAVDLKDKWRNL 465 8********************************99***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.486 | 411 | 467 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-11 | 413 | 466 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.01E-14 | 413 | 466 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0097 | 415 | 467 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-8 | 418 | 465 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.10E-18 | 418 | 466 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0000783 | Cellular Component | nuclear telomere cap complex | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MDIDTDISHW ILEFILRQPL DDSVLNGFIH VLPLPNDKPN LKKALLIRKI ESEISNGSVN 60 EKILDFLELI EELNHQDGIE ASEVMKAAYC AVAVECTVKF LNSEGTGGDK GKYFDAVRRI 120 WKRKINLTEK IENVGFVSEE LWNWRDEIEA ALWDDKCSYS VIMKSKAVVA VESVKFFVRE 180 AKERTGSPFL DVVAEAYQSD ETMKTLFGGL NKEGARRENN REVSKGTALR RKKHVAFKRT 240 REGVRINDSI ELELKASGGG GQDGLPSSAE IQKAEKALKL SSLELRAMVK DPLPEALRYA 300 ETLSHLARDN MGHQPAGNRS DRAPPPMYSS SRLFQASGDK CEAQHNFHQS AASKPDQVNQ 360 NTTANPIELD DFLDKLTEGS PSPSKANRAT LPTPKTVRVS PLKKYEYKKI TTRRKVTKWS 420 SLEEETLRAG VQQYGIGNWK FILNTYPNIF SARTAVDLKD KWRNLIS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 123 | RRIWKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.17968 | 0.0 | fruit| leaf |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00052 | PBM | Transfer from AT1G15720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g082510.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC226726 | 0.0 | Solanum lycopersicum chromosome 6 clone C06HBa0057D21, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004242481.1 | 0.0 | uncharacterized protein LOC101245372 | ||||
TrEMBL | A0A3Q7HXX2 | 0.0 | A0A3Q7HXX2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g082510.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3774 | 24 | 39 | Representative plant | OGRP1503 | 14 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15720.1 | 1e-16 | TRF-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g082510.2.1 |
Publications ? help Back to Top | |||
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