PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g076770.2.1
Common NameLOC101260351
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 308aa    MW: 34693.9 Da    PI: 9.5937
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g076770.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.5e-082468345
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                        +WT+ E + + da +++ ++   +W+++a++++ g++  ++   + 
  Solyc06g076770.2.1 24 KWTPAENKAFEDALALFDKDtpdRWHRVAEMVP-GKSVVDVMRQYK 68
                        8********************************.****99988775 PP
2Myb_DNA-binding47.54.2e-15131175347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Solyc06g076770.2.1 131 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 175
                         7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.7522073IPR017884SANT domain
SMARTSM007178.4E-102173IPR001005SANT/Myb domain
SuperFamilySSF466892.3E-112378IPR009057Homeodomain-like
PfamPF002491.2E-62468IPR001005SANT/Myb domain
CDDcd001671.47E-72470No hitNo description
PROSITE profilePS5129419.89124180IPR017930Myb domain
SuperFamilySSF466895.31E-17125179IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17127179IPR006447Myb domain, plants
SMARTSM007172.5E-12128178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-12129175IPR009057Homeodomain-like
PfamPF002499.8E-13131175IPR001005SANT/Myb domain
CDDcd001671.37E-11131176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEILSPAPYL SNPSWFLDEG KSTKWTPAEN KAFEDALALF DKDTPDRWHR VAEMVPGKSV  60
VDVMRQYKEL EDDVSRIEAG LVTIPGYSTS PFTLEWGNSH SFDGYKQSYV VGGKRPLSNR  120
PPEQERKKGI PWTEEEHKLF LMGLKKYGKG DWRNISRNFV VTRTPTQVAS HAQKYFIRQL  180
SGGKDKRRAS IHDITTINLN DNQTLSPDYQ KPTSPDQSTM ISQQPKSAAN VMNKMPFQWS  240
QVNNGTATGF NSAQASLFMS PALYGGNSYG NTKMQIQSLQ RGGMHEPYFG SQSMNFQLQS  300
AHPYHQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-142090676RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.154370.0floral bud| fruit| leaf| trichome
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g076770.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241178.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-143DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A3Q7H0W00.0A0A3Q7H0W0_SOLLC; Uncharacterized protein
STRINGSolyc06g076770.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-101Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]