PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g076280.1.1
Common NameLOC101246637
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 749aa    MW: 84523 Da    PI: 5.1672
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g076280.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.72.2e-1103747451373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL++cA+ v+++d + a + L+++++++s+ gd+ qRla++f+ +L+arla++++++y+al+p++ +    +e+l+a++++  ++P+ 
  Solyc06g076280.1.1 374 LRTLLVSCAQSVAADDRRTAYEQLKQIRQHCSSIGDAYQRLASVFADGLEARLAGTGTQIYAALAPKKIT---AAEKLKAYQVYLSACPFK 461
                         6789****************************************************************99...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         k+s + aN++I   +++++++H iDf+i +G+QWp L+q L++ p+gpp+lRiTg++ p++g   +e+le+tg+rLak++e+++vpfe+n+
  Solyc06g076280.1.1 462 KISIFFANKMIFHTASNARTLHLIDFGILYGFQWPILIQLLSEIPDGPPKLRITGIDLPQPGfrPAESLEQTGSRLAKYCERFKVPFEYNA 552
                         *************************************************************9***************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                         ++++++e+++le+L++ +gE++aVn+ ++ ++llde+v l+s+rd+vL l+++++P+++v +  + +++++ F++rf eal +ys+lfd++
  Solyc06g076280.1.1 553 IATQNWENIKLEDLKLASGETVAVNCLFRFKNLLDETVMLDSPRDAVLGLIRKMNPDIFVQAVINGSYSAPFFVTRFREALFHYSTLFDMF 643
                         *999*************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +a+lpr +++r   E+e+ +re++nv+aceg+er+er et+++W+ r ++aGFk +pl+++ +++ ++ ++  + + +  +e+ +++++gW
  Solyc06g076280.1.1 644 DATLPRGDQKRLHFEQEFYRREAMNVIACEGSERVERPETYKQWQVRNMRAGFKILPLNQQLVQKLRCKVKAGYLRDFVFDEDGKWMLQGW 734
                         **************************************************************************888************** PP

                GRAS 363 kdrpLvsvSaW 373
                         k+r + + S+W
  Solyc06g076280.1.1 735 KGRVVCASSCW 745
                         *********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.712348726IPR005202Transcription factor GRAS
PfamPF035147.6E-108374745IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MDPRFIPLSD PVNTFEFEDQ INLSSYEGSL NPPHNYNDDY VAFGVPYTAP SVDIGNFAPS  60
SNVSSEVDSP DDHDSDFLFK YLNQILMEEN IEDKPSMFHD PLALKAAEKS LYEALGKSYP  120
PSPYHVDHQL ESPSPDSIFQ TSSDHSTSSS NAHSNSMDPH WIVDPGESSL SLPVESHPSE  180
YSIQPLMQSN SERSHGSLNN INNLNVHMDS FLNPNALSNM FTDRESILQF KRGVEEANKF  240
LPNVSQFVVD LDKYTFPPKV EEVTKEAVVK VEKDERNHSP NGTKGRKHQY PEDSDFEDER  300
SNKQSAIYVE EEAELSEMFD RVLLCTDKGE TICGDVKCEM PVDNSLDQNG QAHGSNGGNT  360
RAKKQGTKNE AVDLRTLLVS CAQSVAADDR RTAYEQLKQI RQHCSSIGDA YQRLASVFAD  420
GLEARLAGTG TQIYAALAPK KITAAEKLKA YQVYLSACPF KKISIFFANK MIFHTASNAR  480
TLHLIDFGIL YGFQWPILIQ LLSEIPDGPP KLRITGIDLP QPGFRPAESL EQTGSRLAKY  540
CERFKVPFEY NAIATQNWEN IKLEDLKLAS GETVAVNCLF RFKNLLDETV MLDSPRDAVL  600
GLIRKMNPDI FVQAVINGSY SAPFFVTRFR EALFHYSTLF DMFDATLPRG DQKRLHFEQE  660
FYRREAMNVI ACEGSERVER PETYKQWQVR NMRAGFKILP LNQQLVQKLR CKVKAGYLRD  720
FVFDEDGKWM LQGWKGRVVC ASSCWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-423637478380Protein SCARECROW
5b3h_A2e-423637477379Protein SCARECROW
5b3h_D2e-423637477379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.54030.0callus| flower| fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g076280.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0138470.0Lycopersicon esculentum clone 132804F, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241220.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A3Q7HX770.0A0A3Q7HX77_SOLLC; Uncharacterized protein
STRINGSolyc06g076280.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]