PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g076030.2.1

Common Name

LOC101250604

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 335aa MW: 36037.4 Da PI: 9.282

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g076030.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.6	2.7e-38	69	128	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+ lkcprCdstntkfCy+nny+lsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+ Solyc06g076030.2.1 69 EAGLKCPRCDSTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSK 128 6779*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-37	52	121	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.9E-32	71	126	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.581	72	126	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	74	110	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MVFSSFPVYL DHPNLHQLQQ ADGHQQGNTG LELPTVQPPP PMQVGASPGS IRPGSMVDRA 60 RLAKIPLPEA GLKCPRCDST NTKFCYFNNY NLSQPRHFCK TCRRYWTRGG ALRSVPVGGG 120 CRRNKRSKSS SNNNNNNSSK STGGSNVNTN KTIASGTSTS ASPSSCSTEI MNGRHHFPHE 180 QPTQLTPLMA AFQNLNHHYG GFQPNLVSTH HGNGSALSSH HHEMGFQIGN STNTNNTNNL 240 PVPSGGGSDH QWRLPSLAAN TNLYPFQHGS DQGIHESSAG NNNNINGHHD EQGLNSTKQF 300 LGTMENNSNQ YWGGNAWTGG FSGLNSSSSA SHLL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.19193	0.0	callus

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00407	DAP	Transfer from AT3G55370	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g076030.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004241234.1	0.0	dof zinc finger protein DOF2.4
TrEMBL	A0A3Q7H0K4	0.0	A0A3Q7H0K4_SOLLC; Uncharacterized protein
STRING	Solyc06g076030.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	7e-45	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	Solyc06g076030.2.1
Entrez Gene	101250604

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]