PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g075150.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ARF | ||||||||
Protein Properties | Length: 672aa MW: 74911 Da PI: 5.841 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.6 | 9.9e-23 | 103 | 203 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f k+lt+sd+++ g +++p+ +ae++ ++ + ++ +d +g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+vvF Solyc06g075150.2.1 103 FAKTLTQSDANNGGGFSVPRYCAETIfpkldftADPPVQ--VVKAKDVHGVTWNFRHIYRGTPRRHLLTSGWSAFVNKKKLVAGDSVVFV- 190 89*****************************97656555..799**********************************************. PP -SSSEE..EEEEE- CS B3 85 dgrsefelvvkvfr 98 + ++ el+v+++r Solyc06g075150.2.1 191 -KAENDELCVGIRR 203 .5588899****98 PP | |||||||
2 | Auxin_resp | 106.6 | 2.8e-35 | 265 | 345 | 4 | 83 |
Auxin_resp 4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+++++Fe+vY+P ast+e++vk+++v++a++v+++ GmRfkmafeted+s++++ +G +++v+ +dp+rWp+S Wr+L+ Solyc06g075150.2.1 265 LAANGQPFEIVYYPGASTPEYCVKASSVRAAMSVQWCSGMRFKMAFETEDFSQISWfMGSISSVQVVDPIRWPHSLWRLLQ 345 6899***************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.59E-28 | 93 | 205 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.4E-36 | 97 | 209 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.06E-21 | 102 | 203 | No hit | No description |
Pfam | PF02362 | 1.1E-20 | 103 | 203 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.266 | 103 | 205 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.7E-21 | 103 | 205 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.5E-30 | 263 | 345 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 17.706 | 574 | 652 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 672 aa Download sequence Send to blast |
MEVVEEKCVD SLFWHVCTGS MVQIPPVNSK VFYFPQGYAE HTFTNVDFTV LARIPAMILC 60 RVDAVKFLAD TETDEVYAKI RLIPVEDFED DSVVEETEKP AFFAKTLTQS DANNGGGFSV 120 PRYCAETIFP KLDFTADPPV QVVKAKDVHG VTWNFRHIYR GTPRRHLLTS GWSAFVNKKK 180 LVAGDSVVFV KAENDELCVG IRRVKRGGIG GPETQSGWKS TACSYGGFVT EDENSSTNGN 240 LISYGERFRD KGKVSPDEVV RASCLAANGQ PFEIVYYPGA STPEYCVKAS SVRAAMSVQW 300 CSGMRFKMAF ETEDFSQISW FMGSISSVQV VDPIRWPHSL WRLLQVTWDE PDLLQNVKSV 360 NPWLVELVSN MPDINLSHNS PPRKRLCLPQ EFPFDGQFPL PSFSGNPLTS SSYSRYPSDS 420 ITAGIQGARH VRFGVPLLDL HRSEKLQLGV LQPPVSQQAD ADSEIPIGTS KVQKESNENI 480 SCLLTMGTSS QMEKADNVKT PRFLLFGQPI LTEQQMSSVL STHAPPQVQT ERNSDWAQLK 540 TERITPDWKC LSESLSSTFL WNKGYHAAEL GASTDHCKVF LDSEDVGRTL DLSVLGSYAE 600 LYKRLADMFE MERLDMVTRV LYLDATGASK QIGDEPFSDF IKTAKRLTIL KKSGNSATRK 660 WLTDLPILNV V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 7e-75 | 9 | 366 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.24077 | 0.0 | fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g075150.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM195247 | 0.0 | Solanum lycopersicum auxin response factor 16 (ARF16) mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234880.2 | 0.0 | auxin response factor | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A3Q7H3N8 | 0.0 | A0A3Q7H3N8_SOLLC; Auxin response factor | ||||
STRING | Solyc06g075150.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA592 | 24 | 115 | Representative plant | OGRP526 | 15 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g075150.2.1 |
Entrez Gene | 100736511 |
Publications ? help Back to Top | |||
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