PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g074910.2.1

Common Name

LOC101260444

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 303aa MW: 34402.5 Da PI: 7.883

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g074910.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49	1.4e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l++ ++++G+g +W + + + g++R++k+c++rw++yl Solyc06g074910.2.1 14 RGPWSPEEDAKLKEFIEKYGTGgNWIALPLKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	36.3	1.3e-11	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd + + + G++ W+ Ia+ ++ gRt++++k++w++ Solyc06g074910.2.1 69 GDFSDEEDRVICSLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 679****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.872	9	62	IPR017930	Myb domain
SuperFamily	SSF46689	2.88E-27	11	109	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-12	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	7.9E-15	14	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-23	15	69	IPR009057	Homeodomain-like
CDD	cd00167	3.74E-9	16	62	No hit	No description
PROSITE profile	PS51294	22.317	63	117	IPR017930	Myb domain
SMART	SM00717	7.3E-11	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-10	69	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-23	70	117	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MGRAPCCDKN NVKRGPWSPE EDAKLKEFIE KYGTGGNWIA LPLKAGLKRC GKSCRLRWLN 60 YLRPNIKHGD FSDEEDRVIC SLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGF 120 IQSSSNINQR TKSPNLLFPP TSTLQTTFQS QSQASISNLL RDSYVEPIPL VQPNFMYNNN 180 NMMNFQLGTN NQHSYNFHDQ SLMNPMQTIS SCSSSDGLSC KQISYGNEEM MCQIPFEETQ 240 KFTLDNYCTT WADHQKTNGY FGNNFQSSQF QYDDHTNIEE IKELISSSSS NGNGCNNVGY 300 WG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-27	14	117	7	108	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g074910.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004242101.1	0.0	transcription factor RAX1-like
TrEMBL	A0A3Q7H0Q3	0.0	A0A3Q7H0Q3_SOLLC; Uncharacterized protein
STRING	Solyc06g074910.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	9e-77	myb domain protein 36

Link Out ? help Back to Top
Phytozome	Solyc06g074910.2.1
Entrez Gene	101260444

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]