PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g074800.1.1

Common Name

LOC104648015

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 327aa MW: 35814.4 Da PI: 6.8349

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g074800.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Solyc06g074800.1.1 137 YECKTCNRTFPSFQALGGHRTSH 159 99*********999998888777 PP
2	zf-C2H2	13.6	0.0002	221	243	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Solyc06g074800.1.1 221 HECSICGAEFSSGQALGGHMRRH 243 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	8.0E-13	136	161	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.28E-8	136	159	No hit	No description
SMART	SM00355	0.059	137	159	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.408	137	164	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	139	159	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.28E-8	216	243	No hit	No description
SMART	SM00355	0.01	221	243	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	8.5E-13	221	245	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.743	221	243	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	223	243	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MEFSEDSIDR TLVFKGKRSK RPRQFMAVAM VTSTSSTAAA DDSAGGGGSG GDGGEDVYNY 60 SSSMQYSSST TSTTQISTTS STEEDEDMAN CLILLAQSGR CQKLQVESTE RKMVKISSRK 120 FTEMATTTPG KAGFYVYECK TCNRTFPSFQ ALGGHRTSHK KIKTEEKKST ADSVSPSIDH 180 HHQQQQQEEK INRIVTAPTQ IVNKGNSNLH SNLINKQPKI HECSICGAEF SSGQALGGHM 240 RRHRPPTITA TNTKITVDET SNNTSDNLSH DDDQNSKKPK LFLSLDLNLP ASPEDDHHRD 300 DNNNFEFSAN QQSLLFSAAA LVDCHY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g074800.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010322414.1	0.0	zinc finger protein ZAT5-like
TrEMBL	A0A3Q7H0N2	0.0	A0A3Q7H0N2_SOLLC; Uncharacterized protein
STRING	Solyc06g074800.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80
Representative plant	OGRP2350	10	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	6e-51	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Solyc06g074800.1.1
Entrez Gene	104648015

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]