PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g072750.2.1

Common Name

LOC101246442

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HSF

Protein Properties

Length: 483aa MW: 54336 Da PI: 5.1769

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g072750.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.9	2.1e-35	22	114	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+y++++d++++ ++sws+++nsfvv++ ef+++vLpkyFkh+nf+SFvRQLn+Yg+kkv+ + weF+++ F +g+k+ Solyc06g072750.2.1 22 FLSKTYDMVDDRSTDAVVSWSKSNNSFVVWNVPEFSRDVLPKYFKHNNFSSFVRQLNIYGYKKVDPDC---------WEFANEGFLRGQKH 103 9*************************************************************9987.........********** PP XXXXXXXXXXX CS HSF_DNA-bind 93 llekikrkkse 103 ll++i r+k + Solyc06g072750.2.1 104 LLKTISRRKPS 114 ******976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.0E-37	16	106	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	4.35E-34	17	111	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.9E-59	18	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	5.9E-31	22	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-18	22	45	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-18	60	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	61	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-18	73	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MSPDGEKTKG GVHEIGNSVP PFLSKTYDMV DDRSTDAVVS WSKSNNSFVV WNVPEFSRDV 60 LPKYFKHNNF SSFVRQLNIY GYKKVDPDCW EFANEGFLRG QKHLLKTISR RKPSQMQVHQ 120 ETASQVQSLS VGSCVEVGKI GIEEEVERLK IDKSIHMEEL VSLRQQQKAT DHRLENVGQR 180 LQLMEQREQQ AMTFLAKALQ SPGFIAELVH QQNEGKRRIP GMNKKRRFPN QEEENYAAKQ 240 VSTLRDRQIV RYQPLMNEAA KALLQKLLKT NTSGRLETIV KNTHGFLTNR ARSFENTLET 300 GGISPHISEV TLSQLATSSQ SHLMSDSGFP FNSSLSVIPE IQYSPSLVPG QAKVPQFPEL 360 NALYSKTDNV NPEFSGHGFN TPETHEITNL KRPETGDMPY IETMQDIVDD VTSIIPDGFS 420 MDDVFSDEMP KLPGINDTFW DQILLASPLT GDKDEIGSLA LDDGLSKEED VPEVQESDCD 480 KL*

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MSPDGEKTKG GVHEIGNSVP PFLSKTYDMV DDRSTDAVVS WSKSNNSFVV WNVPEFSRDV  60
LPKYFKHNNF SSFVRQLNIY GYKKVDPDCW EFANEGFLRG QKHLLKTISR RKPSQMQVHQ  120
ETASQVQSLS VGSCVEVGKI GIEEEVERLK IDKSIHMEEL VSLRQQQKAT DHRLENVGQR  180
LQLMEQREQQ AMTFLAKALQ SPGFIAELVH QQNEGKRRIP GMNKKRRFPN QEEENYAAKQ  240
VSTLRDRQIV RYQPLMNEAA KALLQKLLKT NTSGRLETIV KNTHGFLTNR ARSFENTLET  300
GGISPHISEV TLSQLATSSQ SHLMSDSGFP FNSSLSVIPE IQYSPSLVPG QAKVPQFPEL  360
NALYSKTDNV NPEFSGHGFN TPETHEITNL KRPETGDMPY IETMQDIVDD VTSIIPDGFS  420
MDDVFSDEMP KLPGINDTFW DQILLASPLT GDKDEIGSLA LDDGLSKEED VPEVQESDCD  480
KL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-25	17	111	24	129	Heat shock factor protein 1
5d5v_B	1e-25	17	111	24	129	Heat shock factor protein 1
5d5v_D	1e-25	17	111	24	129	Heat shock factor protein 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g072750.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC211039	0.0	Solanum lycopersicum chromosome 6 clone C06HBa0084A18, complete sequence
GenBank	AC219227	0.0	Solanum lycopersicum chromosome 6 clone C06SLm0113N10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004242136.1	0.0	heat stress transcription factor A-1b-like
TrEMBL	A0A3Q7H2A9	0.0	A0A3Q7H2A9_SOLLC; Uncharacterized protein
STRING	Solyc06g072750.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5054	21	37
Representative plant	OGRP96	17	233

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-102	heat shock factor 3

Link Out ? help Back to Top
Phytozome	Solyc06g072750.2.1
Entrez Gene	101246442

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]