PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g072370.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

BBR-BPC

Protein Properties

Length: 287aa MW: 32063.7 Da PI: 10.1826

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g072370.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	289.7	1.2e-88	4	286	9	301
GAGA_bind 9 rnkgyyepa.aslkenlglqlmssiaerdakirernlalsekkaavaerd...maflqrdkalaernkalverdnkllalllvenslasal 95 rn++y+ep+ + k +lglq +ss++e+ r+ + + +++++++++ ma ++ a+++ + + + + ++++++s ++++ Solyc06g072370.2.1 4 RNWSYFEPTpTVPKGHLGLQFVSSMNEKPPHFRNIHDNHQQQQQSHQPDHpsvMASTN-GGAFHH--HRVCGLSESPMPMEYMRDSWVNQK 91 9*****9677799*******99988866666555555554443333377744.445555..577777888999999999999999 PP GAGA_bind 96 pvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader 186 + l+ +s++++qq p+l + + ++++ ++ +++ +kk+ ++++ k++k kk+kk ++++k++++++ ++r Solyc06g072370.2.1 92 DYREKYLNVLSSMQMHQQ---PNLVKVETA------PLVEEVCQEGDNIGGLAKKRGAGQSQELKSPKPKKAKKATRAPKDESTSS--PPR 171 888888888888887777...433332222......23344444455555555555555566677777777777666665555444..489 PP GAGA_bind 187 skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGy 277 ++a++ks ++v+ng+++D+s +P+P+CsCtGa +qCY+WG+GGWqSaCCtt++S yPLP++ krrg+RiagrKmS gafkk+LekLa+eGy Solyc06g072370.2.1 172 ARAPRKSAEVVINGINMDISVIPIPICSCTGAAQQCYRWGCGGWQSACCTTNLSSYPLPMNVKRRGSRIAGRKMSLGAFKKVLEKLASEGY 262 *************************************************************************************** PP GAGA_bind 278 dlsnpvDLkdhWAkHGtnkfvtir 301 ++snp+DLk hWA+HGtnkfv ir Solyc06g072370.2.1 263 NFSNPIDLKPHWARHGTNKFVIIR 286 ********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.2E-124	1	286	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	3.9E-94	2	286	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MHIRNWSYFE PTPTVPKGHL GLQFVSSMNE KPPHFRNIHD NHQQQQQSHQ PDHPSVMAST 60 NGGAFHHHRV CGLSESPMPM EYMRDSWVNQ KDYREKYLNV LSSMQMHQQP NLVKVETAPL 120 VEEVCQEGDN IGGLAKKRGA GQSQELKSPK PKKAKKATRA PKDESTSSPP RARAPRKSAE 180 VVINGINMDI SVIPIPICSC TGAAQQCYRW GCGGWQSACC TTNLSSYPLP MNVKRRGSRI 240 AGRKMSLGAF KKVLEKLASE GYNFSNPIDL KPHWARHGTN KFVIIR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.24338	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g072370.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ982310	0.0	Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC5) mRNA, complete cds
GenBank	FJ982311	0.0	Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC5) gene, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001266122.1	0.0	GAGA-binding transcriptional activator isoform 1
Refseq	XP_010322309.1	0.0	GAGA-binding transcriptional activator isoform X1
Refseq	XP_010322311.1	0.0	GAGA-binding transcriptional activator isoform X1
Refseq	XP_025887075.1	0.0	GAGA-binding transcriptional activator isoform X1
TrEMBL	A0A3Q7HUZ5	0.0	A0A3Q7HUZ5_SOLLC; Uncharacterized protein
STRING	Solyc06g072370.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10048	20	26
Representative plant	OGRP1865	12	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	6e-73	basic pentacysteine 2

Link Out ? help Back to Top
Phytozome	Solyc06g072370.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]