PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g070990.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 650aa MW: 71657.1 Da PI: 6.5112

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g070990.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.9	2.7e-30	278	337	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+ Solyc06g070990.2.1 278 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApNCPVRKQVQRCAEDMSILITTYEGTHNHT 337 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-31	263	339	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-27	271	339	IPR003657	WRKY domain
PROSITE profile	PS50811	28.001	273	339	IPR003657	WRKY domain
SMART	SM00774	1.5E-36	278	338	IPR003657	WRKY domain
Pfam	PF03106	1.1E-26	279	336	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence Send to blast
MENKNKAEYY SPDDEDRDID NQENIIHQFG KGRKEREDDK SKPSSPHHKD YMNIDNIEGG 60 AVNVMVKRER SPPEHNSMAS SSTHKEQDDQ LASAKDEMRE VMEENQRLRM HLDRMMKEYR 120 NLQNQFHDIV QKETDQKSSS TTVNTSTTHH DHESDQEADQ LVSLSLGRTT SDMKKDDLSK 180 ILKKDKVHDD EGVSNNNKSL DLGLDCKFET TPTECSPVNY SPENSLDDIQ ANKDENEETS 240 NKNLKTMRNN GDGDDVSQQN PTKRARVSVR VRCDAPTMND GCQWRKYGQK IAKGNPCPRA 300 YYRCTVAPNC PVRKQVQRCA EDMSILITTY EGTHNHTLPL SATAMASTTS AAASMLLSGS 360 SNSSDPNPQV TATTTTTPTT TTSANINGLN FYLSDTSKHH KSPYYFPNSS ISASAPNSLP 420 TITLDLTSTS SSSPSSLSHL NRMTQNFPPR YNYNNNNSTT NLNFSSVLES NSLPISWTNN 480 YPNQTYNKNN QNFGPLTFSS RSSQDNIFQS YLQKNTTQSS LPPDTIAAAT KAITSDPNFH 540 SALAAALTSI IGNSPIENKS VHNLNVTEPF PILSSLPSSS NPNKCSSSFL NKPTSSASAN 600 NNNNSNSNSN STQQPGNNSM VFFGQSSSSL PFSTSNKGKS TSPGDSKFD*

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence Send to blast

MENKNKAEYY SPDDEDRDID NQENIIHQFG KGRKEREDDK SKPSSPHHKD YMNIDNIEGG  60
AVNVMVKRER SPPEHNSMAS SSTHKEQDDQ LASAKDEMRE VMEENQRLRM HLDRMMKEYR  120
NLQNQFHDIV QKETDQKSSS TTVNTSTTHH DHESDQEADQ LVSLSLGRTT SDMKKDDLSK  180
ILKKDKVHDD EGVSNNNKSL DLGLDCKFET TPTECSPVNY SPENSLDDIQ ANKDENEETS  240
NKNLKTMRNN GDGDDVSQQN PTKRARVSVR VRCDAPTMND GCQWRKYGQK IAKGNPCPRA  300
YYRCTVAPNC PVRKQVQRCA EDMSILITTY EGTHNHTLPL SATAMASTTS AAASMLLSGS  360
SNSSDPNPQV TATTTTTPTT TTSANINGLN FYLSDTSKHH KSPYYFPNSS ISASAPNSLP  420
TITLDLTSTS SSSPSSLSHL NRMTQNFPPR YNYNNNNSTT NLNFSSVLES NSLPISWTNN  480
YPNQTYNKNN QNFGPLTFSS RSSQDNIFQS YLQKNTTQSS LPPDTIAAAT KAITSDPNFH  540
SALAAALTSI IGNSPIENKS VHNLNVTEPF PILSSLPSSS NPNKCSSSFL NKPTSSASAN  600
NNNNSNSNSN STQQPGNNSM VFFGQSSSSL PFSTSNKGKS TSPGDSKFD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	9e-20	265	339	1	74	WRKY transcription factor 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.11066	0.0	callus\| root

Functional Description ? help Back to Top
Source	Description
UniProt	In association with WRKY72A, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g070990.2.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU017422	0.0	Solanum lycopersicum WRKY72-like protein mRNA, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234773.2	0.0	WRKY transcription factor 72b
Swissprot	D8VNC6	0.0	WK72B_SOLLC; WRKY transcription factor 72B
TrEMBL	A0A1U8H0S0	0.0	A0A1U8H0S0_CAPAN; Uncharacterized protein
TrEMBL	A0A2G2ZCE2	0.0	A0A2G2ZCE2_CAPAN; probable WRKY transcription factor 61
STRING	Solyc06g070990.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	1e-55	WRKY DNA-binding protein 72

Link Out ? help Back to Top
Phytozome	Solyc06g070990.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326]