PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g069850.2.1
Common NameLOC101253907
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 378aa    MW: 41783.1 Da    PI: 6.2449
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g069850.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.8e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd +lv +++++G+g+W+ I+   g+ R+ k+c++rw +yl
  Solyc06g069850.2.1 14 KGPWTPEEDIILVSYIQEHGPGNWRNIPTNTGLLRCSKSCRLRWTNYL 61
                        79******************************99************97 PP
2Myb_DNA-binding49.31.2e-1567112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T+ E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Solyc06g069850.2.1  67 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.526965IPR017930Myb domain
SuperFamilySSF466898.07E-3111108IPR009057Homeodomain-like
SMARTSM007177.1E-151363IPR001005SANT/Myb domain
PfamPF002495.2E-161461IPR001005SANT/Myb domain
CDDcd001677.28E-121661No hitNo description
Gene3DG3DSA:1.10.10.609.6E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129419.60966116IPR017930Myb domain
SMARTSM007171.5E-1566114IPR001005SANT/Myb domain
PfamPF002492.9E-1467112IPR001005SANT/Myb domain
CDDcd001671.21E-1069111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGRPPCCEKS GVKKGPWTPE EDIILVSYIQ EHGPGNWRNI PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLNNNK  120
KVEGHDDHQE GTSASSSSSQ SKIIKGQWER RLQTDIHTAK QALCDALSLD TTPNNKNNNN  180
NPPPHDQDQQ PPSVQTPTTY ASSAENIAKL LQNWMKNSPK STSSSSSKIT PMSSLNNNLS  240
IGAVSSSSPS EGTVNVTPGQ GLDSIFSFNS SNNSDVSQSV SVDEGGNFST PENHNNNNNN  300
NAGIYQVESK PNLPDFKPEN GNFQEESKQN METQQVPLTM LEKWLLEDAN AQAEQEDQLM  360
GIGMGMGMTL AETNDLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.151930.0callus| flower
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g069850.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8286785e-07Solanum lycopersicum mRNA for heat shock protein 70 isoform 1 (hsc70.1 gene)
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241580.10.0myb-related protein 306-like
SwissprotP813921e-119MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A3Q7H0Q50.0A0A3Q7H0Q5_SOLLC; Uncharacterized protein
STRINGSolyc06g069850.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.15e-95myb domain protein 30
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]