PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g069760.2.1

Common Name

SlDof22

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 493aa MW: 53491.7 Da PI: 6.5082

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g069760.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116	1.5e-36	140	199	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCyynn +++qPr+fC++C+ryWt+GG++rn+PvG+grrknk+ Solyc06g069760.2.1 140 PDKILPCPRCNSLDTKFCYYNNNNVNQPRHFCRSCQRYWTAGGTMRNLPVGAGRRKNKNL 199 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	137	197	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.2E-31	142	198	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.773	144	198	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	146	182	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MTCDSEIKLF GKILPVVVSG VGRGLSGSDG VIYDGNRNGS DLDRCLEGSK ASSVEKDEGS 60 EYEKQEAEKD NITGELSEAK SEEGDQNQMI EESENPKTPS ESESSPKSST EEDPQAVKSS 120 KTENEPTNVT NSEQNNLKKP DKILPCPRCN SLDTKFCYYN NNNVNQPRHF CRSCQRYWTA 180 GGTMRNLPVG AGRRKNKNLA SQYRNISIPE GLLAAGIESP NGLIHHPLFK PNGTILSFGP 240 DLPLCEPMAS ALNQAEKRVS TGIQNGSHKS EVKNSSCKGG DSGDECCRGI NIPTPNMMVE 300 EGKGEPHKAV MHSINGIPSP VPCLHGVPWP FPWNAAVPVS AICPIPFPMP FFPTPYWNCS 360 VPPWSNPWLS PPLRAANEKT SGSDPTSSLG KHSREGDLLK PSNPGGKEQS EQKYSEGSIL 420 VPKTLRIDDP DEAAKSSIWS TLGIKYDSTN RGEFFKALQP KSNDKHNKAN TFPVLHTNPA 480 ALSRSITFQQ GA*

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MTCDSEIKLF GKILPVVVSG VGRGLSGSDG VIYDGNRNGS DLDRCLEGSK ASSVEKDEGS  60
EYEKQEAEKD NITGELSEAK SEEGDQNQMI EESENPKTPS ESESSPKSST EEDPQAVKSS  120
KTENEPTNVT NSEQNNLKKP DKILPCPRCN SLDTKFCYYN NNNVNQPRHF CRSCQRYWTA  180
GGTMRNLPVG AGRRKNKNLA SQYRNISIPE GLLAAGIESP NGLIHHPLFK PNGTILSFGP  240
DLPLCEPMAS ALNQAEKRVS TGIQNGSHKS EVKNSSCKGG DSGDECCRGI NIPTPNMMVE  300
EGKGEPHKAV MHSINGIPSP VPCLHGVPWP FPWNAAVPVS AICPIPFPMP FFPTPYWNCS  360
VPPWSNPWLS PPLRAANEKT SGSDPTSSLG KHSREGDLLK PSNPGGKEQS EQKYSEGSIL  420
VPKTLRIDDP DEAAKSSIWS TLGIKYDSTN RGEFFKALQP KSNDKHNKAN TFPVLHTNPA  480
ALSRSITFQQ GA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.8550	0.0	callus\| flower\| fruit\| leaf

Function -- GeneRIF ? help Back to Top
Overexpression in Arabidopsis of SlCDF3 but not SlCDF1 promotes late flowering through modulation of the expression of flowering control genes such as CO and FT. Data connects SlCDFs to undescribed functions related to abiotic stress tolerance and flowering time through the regulation of specific target genes and an increase in particular metabolites. [SlCDF3] [PMID: 24399177]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g069760.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001315363.1	0.0	Dof zinc finger protein 22
TrEMBL	A0A3Q7GYI8	0.0	A0A3Q7GYI8_SOLLC; Uncharacterized protein
STRING	Solyc06g069760.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-76	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Solyc06g069760.2.1
Entrez Gene	101255410

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Corrales AR, et al. Characterization of tomato Cycling Dof Factors reveals conserved and new functions in the control of flowering time and abiotic stress responses. J. Exp. Bot., 2014. 65(4): p. 995-1012 [PMID:24399177] Cai X, et al. The transcription factor SlDof22 involved in ascorbate accumulation and salinity stress in tomato. Biochem. Biophys. Res. Commun., 2016. 474(4): p. 736-41 [PMID:27157141]