PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g069710.2.1

Common Name

LOC101255705

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 340aa MW: 38049.3 Da PI: 8.049

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g069710.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.2	4.5e-55	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL +kv ++++ + +i +vd++kvePwdLp k+k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkd+e Solyc06g069710.2.1 16 LPPGFRFHPTDEELITHYLSNKVVDTNFVA-IAIGDVDLNKVEPWDLPWKAKMGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGKDRE 105 79***********************988.78***********888999********************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ +++lvg+kktLvfykgrapkgekt+Wv+he+rle Solyc06g069710.2.1 106 IFR-GKSLVGMKKTLVFYKGRAPKGEKTNWVIHEFRLE 142 .999***************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-62	13	166	IPR003441	NAC domain
PROSITE profile	PS51005	58.486	16	166	IPR003441	NAC domain
Pfam	PF02365	8.5E-28	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MENYSGVVKD DDQMELPPGF RFHPTDEELI THYLSNKVVD TNFVAIAIGD VDLNKVEPWD 60 LPWKAKMGEK EWYFFCVRDK KYPTGLRTNR ATAAGYWKAT GKDREIFRGK SLVGMKKTLV 120 FYKGRAPKGE KTNWVIHEFR LEGKLSLQNL PKTAKNEWVI CRVFQKSSGG KKIHISGLLK 180 LNSNENEMGN SFLPPLTDSA TATASKSSHV HCFSNFLTAQ NNCFPLLSNP MDSYPTTSLV 240 PNTFSCNQIA PFTTTNNPAS FGVQDPSILL RTSLDSYGLN FKKEDIFNVP QETGVISTDM 300 NTDITSVVSN LEMKRRFLED QVPSAGMVGL QGLDCLWSC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-53	13	172	17	174	NAC domain-containing protein 19
3swm_B	2e-53	13	172	17	174	NAC domain-containing protein 19
3swm_C	2e-53	13	172	17	174	NAC domain-containing protein 19
3swm_D	2e-53	13	172	17	174	NAC domain-containing protein 19
3swp_A	2e-53	13	172	17	174	NAC domain-containing protein 19
3swp_B	2e-53	13	172	17	174	NAC domain-containing protein 19
3swp_C	2e-53	13	172	17	174	NAC domain-containing protein 19
3swp_D	2e-53	13	172	17	174	NAC domain-containing protein 19
4dul_A	1e-53	13	172	14	171	NAC domain-containing protein 19
4dul_B	1e-53	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g069710.2.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004241586.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-125	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A3Q7GYH5	0.0	A0A3Q7GYH5_SOLLC; Uncharacterized protein
STRING	Solyc06g069710.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-123	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Solyc06g069710.2.1
Entrez Gene	101255705

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]