PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g069370.2.1

Common Name

LOC101264225

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 550aa MW: 60431.8 Da PI: 7.9909

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g069370.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.9	1.6e-17	254	303	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f +Lre++P++ ++K +Ka+ L +++eYI+ Lq Solyc06g069370.2.1 254 RSKHSATEQRRRSKINDRFLKLREIIPHS----DQKRDKASFLLEVIEYIQFLQ 303 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.8E-23	249	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.71E-19	250	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.71	252	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.0E-15	254	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.11E-14	254	307	No hit	No description
SMART	SM00353	4.3E-13	258	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence Send to blast
MELPQSRPFG TEGRKTTHDF LSLYSPIEQD PRPSQGGHLQ THDFFQPLEQ ARKTVGKEEN 60 KVEVEAIEKQ PPSAAHILPG GIGTYSISYS QQRFPKPEAN TFAVTQTSST DRDDRNSNCS 120 SYSGSGFALW NESAMKKGKT GKENLAGDRH VVREAGLNIG GGKCTTSLER QSQLSSNHNH 180 NTATLSSHSS PQQPSAMENQ SFIHMITSAK NAQEDDDDDE EEFVVKKESP SPSRGNLSVK 240 VDGKSSDQKP NTPRSKHSAT EQRRRSKIND RFLKLREIIP HSDQKRDKAS FLLEVIEYIQ 300 FLQEKVHKYE GSYQSLDSQP STLPWNKCHS MAQGFIDHSQ GTNSASSPAL IRAAKFDENK 360 IGISATGPVT EQTQEPNRTS SVKESSFLSE LTNRAATLCM QPSTFPFGGH TSIASLKSIL 420 APDAGSLELK SQPQCPSNRL NMANYAVTND KLKGQEVSTE SGTLSISSVY SQRLMNTLKQ 480 ALQSSGVDLS QANMSVQIDL AKRADDRSNA STSNFKGDNI SSRNQPTPLF IDTSTREESV 540 HAFKRLKTS*

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence Send to blast

MELPQSRPFG TEGRKTTHDF LSLYSPIEQD PRPSQGGHLQ THDFFQPLEQ ARKTVGKEEN  60
KVEVEAIEKQ PPSAAHILPG GIGTYSISYS QQRFPKPEAN TFAVTQTSST DRDDRNSNCS  120
SYSGSGFALW NESAMKKGKT GKENLAGDRH VVREAGLNIG GGKCTTSLER QSQLSSNHNH  180
NTATLSSHSS PQQPSAMENQ SFIHMITSAK NAQEDDDDDE EEFVVKKESP SPSRGNLSVK  240
VDGKSSDQKP NTPRSKHSAT EQRRRSKIND RFLKLREIIP HSDQKRDKAS FLLEVIEYIQ  300
FLQEKVHKYE GSYQSLDSQP STLPWNKCHS MAQGFIDHSQ GTNSASSPAL IRAAKFDENK  360
IGISATGPVT EQTQEPNRTS SVKESSFLSE LTNRAATLCM QPSTFPFGGH TSIASLKSIL  420
APDAGSLELK SQPQCPSNRL NMANYAVTND KLKGQEVSTE SGTLSISSVY SQRLMNTLKQ  480
ALQSSGVDLS QANMSVQIDL AKRADDRSNA STSNFKGDNI SSRNQPTPLF IDTSTREESV  540
HAFKRLKTS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.12608	0.0	flower\| fruit\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g069370.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004241615.1	0.0	transcription factor BIM1 isoform X3
TrEMBL	A0A1S4BWU1	0.0	A0A1S4BWU1_TOBAC; transcription factor BIM1-like isoform X1
TrEMBL	A0A1U7XMJ4	0.0	A0A1U7XMJ4_NICSY; transcription factor BIM1-like isoform X1
STRING	Solyc06g069370.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3969	23	45
Representative plant	OGRP1360	17	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	3e-93	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc06g069370.2.1
Entrez Gene	101264225

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]