PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g069100.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 498aa MW: 56356.6 Da PI: 6.5917

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g069100.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.3	4.3e-55	14	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhP+deel+++yL +kv++ ++++ ++i++vd++k+ePwdLp+k + +ekewyfFs++d+ky+tg r+nrat++gyWk+tgkdke Solyc06g069100.1.1 14 LPPGFRFHPSDEELITYYLSNKVSDFSFTT-RAIADVDLNKSEPWDLPAKSSMGEKEWYFFSQKDRKYPTGLRSNRATEAGYWKTTGKDKE 103 79***********************999.89***********988899********************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ + elvg+kktLvfykgrapkgekt+Wvmheyrl Solyc06g069100.1.1 104 IFRGGVELVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 140 99999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-62	6	161	IPR003441	NAC domain
PROSITE profile	PS51005	59.837	14	161	IPR003441	NAC domain
Pfam	PF02365	2.4E-28	15	140	IPR003441	NAC domain
Pfam	PF05678	5.6E-11	337	361	IPR008889	VQ

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MMIEQYNIMD EKNLPPGFRF HPSDEELITY YLSNKVSDFS FTTRAIADVD LNKSEPWDLP 60 AKSSMGEKEW YFFSQKDRKY PTGLRSNRAT EAGYWKTTGK DKEIFRGGVE LVGMKKTLVF 120 YKGRAPKGEK TNWVMHEYRL QSNLGFKPPK EEWVVCRLFH KNSTVKKSNA TSSQPSDQVE 180 SISDAYTLPN FNIPAPHEGQ IVNDISLHNY YTSQENMNIV NLDPLPSLLL YKAIQCRGNY 240 NHQPMNIDPS INTMNHAQFY HHTNSNQAIV NNNNNNNLSS PLKINKASHH IKKSLSNSLP 300 SSSSSSSLYN TVAATTSTTI IPHQQQQQQR QPVIIYTHSP KVIHTHPRDF KALVQKLTGL 360 SPEEVSSSPQ SMPMPQYHPK SEPINGEMDH DHDTIIGAES CFGDEQNNYH RNNMTNINTN 420 INEKCDLLMN DDNDSVVTDE NNEFNGSSCI GDNNSSASCY VPHQQLSNYT DSLFSMPSMR 480 NSFSSSSSES IKELPDF*

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MMIEQYNIMD EKNLPPGFRF HPSDEELITY YLSNKVSDFS FTTRAIADVD LNKSEPWDLP  60
AKSSMGEKEW YFFSQKDRKY PTGLRSNRAT EAGYWKTTGK DKEIFRGGVE LVGMKKTLVF  120
YKGRAPKGEK TNWVMHEYRL QSNLGFKPPK EEWVVCRLFH KNSTVKKSNA TSSQPSDQVE  180
SISDAYTLPN FNIPAPHEGQ IVNDISLHNY YTSQENMNIV NLDPLPSLLL YKAIQCRGNY  240
NHQPMNIDPS INTMNHAQFY HHTNSNQAIV NNNNNNNLSS PLKINKASHH IKKSLSNSLP  300
SSSSSSSLYN TVAATTSTTI IPHQQQQQQR QPVIIYTHSP KVIHTHPRDF KALVQKLTGL  360
SPEEVSSSPQ SMPMPQYHPK SEPINGEMDH DHDTIIGAES CFGDEQNNYH RNNMTNINTN  420
INEKCDLLMN DDNDSVVTDE NNEFNGSSCI GDNNSSASCY VPHQQLSNYT DSLFSMPSMR  480
NSFSSSSSES IKELPDF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-55	1	167	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-55	1	167	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-55	1	167	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-55	1	167	4	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-54	1	167	7	174	NAC domain-containing protein 19
3swm_B	1e-54	1	167	7	174	NAC domain-containing protein 19
3swm_C	1e-54	1	167	7	174	NAC domain-containing protein 19
3swm_D	1e-54	1	167	7	174	NAC domain-containing protein 19
3swp_A	1e-54	1	167	7	174	NAC domain-containing protein 19
3swp_B	1e-54	1	167	7	174	NAC domain-containing protein 19
3swp_C	1e-54	1	167	7	174	NAC domain-containing protein 19
3swp_D	1e-54	1	167	7	174	NAC domain-containing protein 19
4dul_A	9e-55	1	167	4	171	NAC domain-containing protein 19
4dul_B	9e-55	1	167	4	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g069100.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232622	3e-18	Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004242189.2	0.0	NAC domain-containing protein 79
TrEMBL	A0A3Q7GXB2	0.0	A0A3Q7GXB2_SOLLC; Uncharacterized protein
STRING	Solyc06g069100.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	6e-92	NAC domain containing protein 58

Link Out ? help Back to Top
Phytozome	Solyc06g069100.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]