PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g068830.1.1
Common NameLOC101264530
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 290aa    MW: 33183.3 Da    PI: 9.3095
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g068830.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16.1e-2099148255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae+Aa a+++a++k++g
  Solyc06g068830.1.1  99 QYRGVRQRP-WGKWAAEIRDPE----KaARVWLGTFHTAEDAAIAYDEAALKFKG 148
                         69*******.**********73....35************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.6E-3398157IPR001471AP2/ERF domain
PROSITE profilePS5103224.31699156IPR001471AP2/ERF domain
SMARTSM003802.9E-3799162IPR001471AP2/ERF domain
PfamPF008473.0E-1299148IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2299157IPR016177DNA-binding domain
CDDcd000182.81E-3299157No hitNo description
PRINTSPR003674.0E-11100111IPR001471AP2/ERF domain
PRINTSPR003674.0E-11122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDRIRRGKRR YESEEKEDRN YNHMYSSARS QHDMSTMVAV LSQVIGNKST TNTNSSSSSS  60
AHHKPLLTLN HQSNTTAAMQ NQLPQLNQQQ GNNEKRRRQY RGVRQRPWGK WAAEIRDPEK  120
AARVWLGTFH TAEDAAIAYD EAALKFKGNK AKLNFPERVQ STTDQFGISY LITNTNHQQH  180
QFQPTNFLPN SDQLQQHHYS NHNADDLKFG VSPSFYHPTG FNPKALDLVE PSKSSSMTYL  240
VQQASSHQVQ EEPRYINHQQ EDENNLKFSS YFGTYSSSGP TLGEFEDQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-2698161468ATERF1
3gcc_A9e-2698161468ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the S phase of the cell cycle. {ECO:0000269|PubMed:23616605}.
UniprotTISSUE SPECIFICITY: Strongly expressed in proliferating cells. Detected in root tips, stipules, shoot apex, floral tissues, young siliques and abscission zones. {ECO:0000269|PubMed:23616605}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g068830.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153552e-08Solanum lycopersicum chromosome 2 clone C02HBa0012A12, complete sequence
GenBankAC2336432e-08Solanum lycopersicum chromosome 2 clone C02HBa0208N01, complete sequence
GenBankAC2336952e-08Solanum lycopersicum chromosome 2 clone C02HBa0208N01, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242192.10.0ethylene-responsive transcription factor ERF114-like isoform X2
SwissprotQ9FH541e-45EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A3Q7HTG70.0A0A3Q7HTG7_SOLLC; Uncharacterized protein
STRINGSolyc06g068830.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.18e-28ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]