PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g068360.2.1
Common NameLOC101266647
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 182aa    MW: 20841.4 Da    PI: 7.5597
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g068360.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-18755254
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                        +++GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  Solyc06g068360.2.1  7 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
                        69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.32E-33664No hitNo description
SuperFamilySSF541714.05E-20765IPR016177DNA-binding domain
PROSITE profilePS5103220.297764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-33764IPR001471AP2/ERF domain
PfamPF008476.4E-11756IPR001471AP2/ERF domain
SMARTSM003801.8E-39770IPR001471AP2/ERF domain
PRINTSPR003679.3E-11819IPR001471AP2/ERF domain
PRINTSPR003679.3E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MARPQQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR  60
TNFAFNDTDS HSSSSTKYLS AALIAKLQRC QMKSLNMVNN RPGTMKLEDQ NDRLSSCGNR  120
GDHGITRRTV QMSVEMPVKY ESQTENNNTQ EFKSLEDHQI EQMIEELLDY GSIELSSVLQ  180
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-15663462ATERF1
3gcc_A2e-15663462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g068360.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242199.11e-136ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW51e-63ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A3Q7GZY51e-134A0A3Q7GZY5_SOLLC; Uncharacterized protein
STRINGSolyc06g068360.2.11e-135(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-54ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]