PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g068210.1.1

Common Name

LOC101268116

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 743aa MW: 85035 Da PI: 5.2077

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g068210.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.4	4.1e-22	134	217	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++leHnH + Solyc06g068210.1.1 134 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAN-----SRRKETRTGCLAMVRLRLVESNRWRVDEVKLEHNHLF 217 69**************************************99888.....8999*****************************77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-19	134	217	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.1E-25	337	423	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.52	623	659	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.5E-5	631	657	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.5E-5	634	661	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 743 aa Download sequence Send to blast
MEEGMGTSEQ LPVGEGSDNE AASEEVFDIT CNGTESDGDQ VLNIEANELG TTAGQILEFE 60 SHEAEKNCEH VLNFESGVPR DNSHRLSEFH SNGLEDPRCG DTAINDCHTG SSLGKSYPPP 120 VVGMEFESYE DAYNYYNCYA KELGFAIRVK SSWTKRNSKE KRGAVLCCNC EGFKTMKEAN 180 SRRKETRTGC LAMVRLRLVE SNRWRVDEVK LEHNHLFDPE RVQNSKSHKK MDAGVKRKLE 240 PAVDVEVRTI KLYRTPAVET SGEGSSDERA ASSQIDGSTR LKLKEGDTQV IYNFFCRMQL 300 TKPNFFYIMD FDDEGYLKNV FWIDSRSRAA YAYFGDVVVV DTTCLSKKYD IPLLAFFGLN 360 HHKETLLLGC SLLADESFET YVWLLRAWLS CMSGRPPQTI ITDRCKALQN AISEIFPRAN 420 HRLNLSIILD SIVNSVGEVG ESEVFHEVLY NTVYGSLKID EFEVAWEEMA QRFGCGGYGW 480 FQSLYDDRER WAPIYMKDTF LAGISIDQNG EFMCPFFDGF VHKETNLREF FDIYDFVLQK 540 NHQKEVVCDL DSKEFSPVLR TRCNYELQLS KLYTKEIFLK FQEEMDLMSN CSGIAQIHTN 600 GPIITYMVKE RGVQGDMSDA RDVEVTYDKI GVEVRCMCSC FNFRGYLCRH ALSVLNYNGI 660 EEIPNHYILT RWRKDFKRLY APELGSSNID ISNPVQLFDH LHRRAMQVVD EGMVSQHHYM 720 VAWQAFKESL NKVRLAADKR VS*

Sequence ? help Back to Top

Protein Sequence Length: 743 aa Download sequence Send to blast

MEEGMGTSEQ LPVGEGSDNE AASEEVFDIT CNGTESDGDQ VLNIEANELG TTAGQILEFE  60
SHEAEKNCEH VLNFESGVPR DNSHRLSEFH SNGLEDPRCG DTAINDCHTG SSLGKSYPPP  120
VVGMEFESYE DAYNYYNCYA KELGFAIRVK SSWTKRNSKE KRGAVLCCNC EGFKTMKEAN  180
SRRKETRTGC LAMVRLRLVE SNRWRVDEVK LEHNHLFDPE RVQNSKSHKK MDAGVKRKLE  240
PAVDVEVRTI KLYRTPAVET SGEGSSDERA ASSQIDGSTR LKLKEGDTQV IYNFFCRMQL  300
TKPNFFYIMD FDDEGYLKNV FWIDSRSRAA YAYFGDVVVV DTTCLSKKYD IPLLAFFGLN  360
HHKETLLLGC SLLADESFET YVWLLRAWLS CMSGRPPQTI ITDRCKALQN AISEIFPRAN  420
HRLNLSIILD SIVNSVGEVG ESEVFHEVLY NTVYGSLKID EFEVAWEEMA QRFGCGGYGW  480
FQSLYDDRER WAPIYMKDTF LAGISIDQNG EFMCPFFDGF VHKETNLREF FDIYDFVLQK  540
NHQKEVVCDL DSKEFSPVLR TRCNYELQLS KLYTKEIFLK FQEEMDLMSN CSGIAQIHTN  600
GPIITYMVKE RGVQGDMSDA RDVEVTYDKI GVEVRCMCSC FNFRGYLCRH ALSVLNYNGI  660
EEIPNHYILT RWRKDFKRLY APELGSSNID ISNPVQLFDH LHRRAMQVVD EGMVSQHHYM  720
VAWQAFKESL NKVRLAADKR VS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.24547	0.0	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g068210.1.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010322661.1	0.0	protein FAR1-RELATED SEQUENCE 8
Refseq	XP_010322662.1	0.0	protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A3Q7GZW0	0.0	A0A3Q7GZW0_SOLLC; Uncharacterized protein
STRING	Solyc06g068210.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Link Out ? help Back to Top
Phytozome	Solyc06g068210.1.1
Entrez Gene	101268116

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]