PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g066340.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 292aa    MW: 32608.6 Da    PI: 9.3105
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g066340.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.52.6e-32103156255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Solyc06g066340.2.1 103 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 156
                         9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.85E-1699156IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-29101156IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-24103156IPR006447Myb domain, plants
PfamPF002493.5E-7104155IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MRPIRGIPLY NQNPLPLPLP LSHHHNNYPI FAHQTFENTA PTTTPTLPIH SSGYCISSFS  60
NNSNKTIPNS SPTTIPFHHS NHQGGLMRSR FLSRFPKRTM RAPRMRWTSS LHARFVHAVE  120
LLGGHERATP KSVLELMDVK DLTLAHVKSH LQMYRTVKTT DRAAVPASSG QSEVFDNGSS  180
GETSEDLMPD MENSKKPDLS DQQGKNSMHL QEIDYHGLWS NSSSRESWQL HGKHGDYPGN  240
IPSLEKTVKN QHIDLEAKCL SYDRLSGEVS SSSITETSPK KPNLEFTLGR P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-16104158458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-16104158458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-16104158458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-16104158458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-16104158458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-16104158458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-16104158458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-16104158458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.160190.0flower| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269|PubMed:14561401}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g066340.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092927e-21Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0320P23, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241756.10.0probable transcription factor KAN2 isoform X1
SwissprotQ9C6167e-64KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A3Q7HSP50.0A0A3Q7HSP5_SOLLC; Uncharacterized protein
STRINGSolyc06g066340.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27382255
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.12e-66G2-like family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]