PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g064590.1.1
Common NameLOC101260546
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 282aa    MW: 31808.6 Da    PI: 4.6346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g064590.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.8e-13119166355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + h ++Er+RR+++ + f  L +++P +     kKl+K++iL  ++eY+k+Lq
  Solyc06g064590.1.1 119 QDHVIAERKRREKMGDLFISLSKIVPGL-----KKLDKSSILGDTIEYMKELQ 166
                         6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.65116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-17118180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10119166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16120182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.87E-12121170No hitNo description
SMARTSM003539.6E-14122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MESNYYDSFQ GMEYSGNYNY EDESFFEFKP NISQGIYDLS SAYNTNIEEK SGQKSISSNN  60
SSSNSGGFLI SFSSNQEEDI GAMISSENSC QESFLLGENN NNNNNNNNVM YKRSPQQAQD  120
HVIAERKRRE KMGDLFISLS KIVPGLKKLD KSSILGDTIE YMKELQEQVK LLEESKKNTS  180
SSLEHNDSNK EQVLGSNKIK VRIMDKNVLI NIHCNKQDGM LGRLLVQMEQ LHLSVHDMRI  240
MPFGPTNLEI SLLAQMEDGC CINVEDIVKA IQINILDLVN N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124129ERKRRE
2125130RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g064590.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025887136.10.0transcription factor bHLH18-like
TrEMBLA0A3Q7HRT80.0A0A3Q7HRT8_SOLLC; Uncharacterized protein
STRINGSolyc06g064590.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88641628
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-28bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]