PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g063070.2.1
Common NameJERF1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 373aa    MW: 41477.8 Da    PI: 4.7974
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g063070.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-18102151255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+G+r+++ +g+W+AeIrdp++     r++lg+f +aeeAa+a++a +++++g
  Solyc06g063070.2.1 102 QYRGIRQRP-WGKWAAEIRDPRK---GIRVWLGTFNSAEEAARAYDAEARRIRG 151
                         69*******.**********954...3************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-31102161IPR001471AP2/ERF domain
CDDcd000185.35E-32102160No hitNo description
SMARTSM003802.8E-36102165IPR001471AP2/ERF domain
PROSITE profilePS5103223.775102159IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-22102161IPR016177DNA-binding domain
PRINTSPR003675.8E-11103114IPR001471AP2/ERF domain
PfamPF008474.8E-11103151IPR001471AP2/ERF domain
PRINTSPR003675.8E-11125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MCGGAIISDL VPPSRISRRL TADFLWGTSD LNKKKKNPSN YHSKPLRSKF IDLEDEFEAD  60
FQHFKDNSDD DDDVKAFGPK SVRSGDSNCE ADRSSKRKRK NQYRGIRQRP WGKWAAEIRD  120
PRKGIRVWLG TFNSAEEAAR AYDAEARRIR GKKAKVNFPD EAPVSVSRRA IKQNPQKALR  180
EETLNTVQPN MTYISNLDGG SDDSFSFFEE KPATKQYGFE NVSFTAVDMG LGSVSPSAGT  240
NVYFSSDEAS NTFDCSDFGW AEPCARTPEI SSVLSEVLET NETHFDDDSR PEKKLKSCSS  300
TSLTVDGNTV NTLSEELSAF ESQMKFLQIP YLEGNWDASV DAFLNTSAIQ DGGNAMDLWS  360
FDDVPSLMGG AY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20102159260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A3e-201011611374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.4440.0flower| fruit| leaf| root| stem| trichome
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g063070.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0442350.0Lycopersicon esculentum transcription factor JERF1 (JERF1) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234513.10.0transcription factor JERF1
TrEMBLQ8LGR90.0Q8LGR9_SOLLC; JERF1
STRINGSolyc06g063070.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-67related to AP2 12
Publications ? help Back to Top
  1. Zhang H, et al.
    The ethylene-, jasmonate-, abscisic acid- and NaCl-responsive tomato transcription factor JERF1 modulates expression of GCC box-containing genes and salt tolerance in tobacco.
    Planta, 2004. 220(2): p. 262-70
    [PMID:15300440]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]