PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g062670.2.1

Common Name

LOC101244006

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 504aa MW: 56295.1 Da PI: 8.5913

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g062670.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.9e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Solyc06g062670.2.1 70 FFCEICNKGFQRDQNLQLHRRGH 92 67*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.33E-6	69	92	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.8E-5	69	92	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.044	70	92	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	2.6E-5	70	92	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.72	70	92	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	112	142	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.7E-4	135	168	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.33E-6	142	167	No hit	No description
SMART	SM00355	150	147	167	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MSIVTCEEAA ASLSSSSNMN NDTNGAFCYP PQHQLVTQQI KKKRNQPGNP DPEAEVIALS 60 PKTLVATNRF FCEICNKGFQ RDQNLQLHRR GHNLPWKLKK RENKEVVRKK VYICPESSCV 120 HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS DCKAHFKTCG TREYKCECGT 180 IFSRRDSFIT HRAFCETLAM ESARSVINER NPTIFSPQMN LQFQQPHYFN SHEQIQAATF 240 PMKKEQQSSD FRHIEIPPWL ITTNSQPFQL GAINPSPSVP LSNFSSSSIF PATTRLDQQY 300 SQSSHKDLNL HHQNPNPNLR GPTLGYDSMG ESGVVSPVHI SATALLQKAA QFGATISNKA 360 SAVTATAAYT GTAKIPHNTH VSVTSTDSAT KQTQQKLSSR EDLTTITGPA NNISGIMTSF 420 SNGFDGSTMF EDAILFGGFN NLNSKKENED EDQQLYFNGS MNEEDHILTK DFLGLKPLSH 480 TDDIFNIAAL VNTEFKNHKT WQS*

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MSIVTCEEAA ASLSSSSNMN NDTNGAFCYP PQHQLVTQQI KKKRNQPGNP DPEAEVIALS  60
PKTLVATNRF FCEICNKGFQ RDQNLQLHRR GHNLPWKLKK RENKEVVRKK VYICPESSCV  120
HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS DCKAHFKTCG TREYKCECGT  180
IFSRRDSFIT HRAFCETLAM ESARSVINER NPTIFSPQMN LQFQQPHYFN SHEQIQAATF  240
PMKKEQQSSD FRHIEIPPWL ITTNSQPFQL GAINPSPSVP LSNFSSSSIF PATTRLDQQY  300
SQSSHKDLNL HHQNPNPNLR GPTLGYDSMG ESGVVSPVHI SATALLQKAA QFGATISNKA  360
SAVTATAAYT GTAKIPHNTH VSVTSTDSAT KQTQQKLSSR EDLTTITGPA NNISGIMTSF  420
SNGFDGSTMF EDAILFGGFN NLNSKKENED EDQQLYFNGS MNEEDHILTK DFLGLKPLSH  480
TDDIFNIAAL VNTEFKNHKT WQS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-30	143	204	3	64	Zinc finger protein JACKDAW
5b3h_F	3e-30	143	204	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	109	KLKKRENKEVVRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g062670.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001308268.1	0.0	zinc finger family protein
Refseq	NP_001308269.1	0.0	zinc finger family protein
TrEMBL	A0A3Q7GUL6	0.0	A0A3Q7GUL6_SOLLC; Uncharacterized protein
STRING	Solyc06g062670.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350
Representative plant	OGRP95	16	242

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	3e-99	indeterminate(ID)-domain 11

Link Out ? help Back to Top
Phytozome	Solyc06g062670.2.1
Entrez Gene	101244006

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]