PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g062630.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 140aa MW: 16132.1 Da PI: 10.2398

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g062630.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	88.8	7.1e-28	68	133	1	66
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAe 66 aCaaCk++rrkCa+dCvlapyfp++++++f n+hklFG+sn++k++++l++ +++am++++++++ Solyc06g062630.2.1 68 ACAACKYQRRKCAPDCVLAPYFPHDRQRQFLNAHKLFGVSNITKIIRHLDQPFKDEAMRTIIFQSD 133 7**************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.853	67	139	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.3E-26	68	133	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MQNQMTSFTN PNNNNNNNNI HIQQTPHTFI TDHNNLNHNN NKYTKRVHNN NNINDKNVLL 60 RVSGAGQACA ACKYQRRKCA PDCVLAPYFP HDRQRQFLNA HKLFGVSNIT KIIRHLDQPF 120 KDEAMRTIIF QSDRPATSY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-19	64	133	7	76	LOB family transfactor Ramosa2.1
5ly0_B	1e-19	64	133	7	76	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g062630.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004242267.2	7e-93	LOB domain-containing protein 22
TrEMBL	M1A1B2	2e-73	M1A1B2_SOLTU; Uncharacterized protein
STRING	Solyc06g062630.2.1	1e-98	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9926	21	26
Representative plant	OGRP5524	10	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	4e-37	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Solyc06g062630.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]