PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g060740.1.1
Common NameLOC101246259
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 307aa    MW: 34225.4 Da    PI: 8.0935
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g060740.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016190212123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C++C+k+ +++  L +H   H
  Solyc06g060740.1.1 190 YQCEICNKVLKSSQALGSHKTIH 212
                         9******************9887 PP
2zf-C2H211.90.00069238260123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp Cgk F +   L  H rtH
  Solyc06g060740.1.1 238 HECPFCGKIFGSGQALGGHKRTH 260
                         79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.7E-5432No hitNo description
PROSITE profilePS5015710.138633IPR007087Zinc finger, C2H2
PfamPF139121.6E-8629IPR007087Zinc finger, C2H2
SMARTSM003550.034628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576671.6E-10189260No hitNo description
PfamPF139124.7E-6190214IPR007087Zinc finger, C2H2
PROSITE profilePS501579.993190217IPR007087Zinc finger, C2H2
SMARTSM003550.021190212IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280192212IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-5235260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.1E-9238260IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.263238260IPR007087Zinc finger, C2H2
SMARTSM003550.027238260IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280240260IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSMEKHKCKL CSRIFTSGKA MGGHMRSHLR TLPLPPKTPP QKQDSGGGGG RSESTLSLYS  60
LKEEEDGEEI GEEKHLGYGL RENPKKSSRI VDPEFLDAGS VVHDRDQSET ESTKKPTRRR  120
SKRTRRMFVS DEAAVDDHPE VKKEKSAEFE PVSSFSDTSP EEDIAVCLMM LSKDVWRNSK  180
FRDQNSKEKY QCEICNKVLK SSQALGSHKT IHKKNNSEEQ NQGKSRELRL KNVDEKLHEC  240
PFCGKIFGSG QALGGHKRTH ILSSSITASS SSKVGDSLMD SSSAKFPFGF IDLNMPAPME  300
DEDFSH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g060740.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242283.10.0zinc finger protein ZAT4
TrEMBLA0A3Q7GXG30.0A0A3Q7GXG3_SOLLC; Uncharacterized protein
STRINGSolyc06g060740.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Representative plantOGRP24041030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.15e-32C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]