PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g053960.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HSF | ||||||||
Protein Properties | Length: 143aa MW: 16643.7 Da PI: 9.9024 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.8 | 2.3e-35 | 33 | 125 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+ye+++d+++++++sws+ nsf+v+d++++a + Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +gkk+ Solyc06g053960.2.1 33 FLTKTYELVDDPSNNDVVSWSRGYNSFIVWDPQNLAINFLPRYFKHNNFSSFVRQLNTYGFRKVNPDH---------WEFANEGFLRGKKH 114 9*****************************************************************99.........************** PP XXXXXXXXXXX CS HSF_DNA-bind 93 llekikrkkse 103 ll++i+r+k + Solyc06g053960.2.1 115 LLRTIRRRKPS 125 ********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 9.52E-35 | 28 | 122 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.0E-54 | 29 | 122 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 3.2E-37 | 29 | 122 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.8E-19 | 33 | 56 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.1E-30 | 33 | 122 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-19 | 71 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 72 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-19 | 84 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MDHFGNLIKE EFDGSFLTPQ PKECLHENGP PPFLTKTYEL VDDPSNNDVV SWSRGYNSFI 60 VWDPQNLAIN FLPRYFKHNN FSSFVRQLNT YGFRKVNPDH WEFANEGFLR GKKHLLRTIR 120 RRKPSNFIKS SSSINNQASK GY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-24 | 31 | 125 | 18 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.19733 | 0.0 | callus| flower| fruit| stem| trichome |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g053960.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP011551 | 7e-07 | Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0087H10, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004241039.1 | 2e-99 | heat stress transcription factor A-6b | ||||
Swissprot | Q9LUH8 | 2e-57 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A3Q7GU15 | 1e-101 | A0A3Q7GU15_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g053960.2.1 | 1e-102 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA572 | 24 | 113 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 2e-58 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g053960.2.1 |
Publications ? help Back to Top | |||
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