PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g051840.1.1 | ||||||||
Common Name | LOC101244085 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 351aa MW: 39354.6 Da PI: 4.5954 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.7e-19 | 124 | 173 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ kl+g Solyc06g051840.1.1 124 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 173 89*******.**********82....35*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-29 | 123 | 180 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-21 | 124 | 180 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.95E-33 | 124 | 180 | No hit | No description |
SMART | SM00380 | 9.2E-38 | 124 | 187 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.2E-13 | 124 | 173 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.657 | 124 | 181 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 125 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 147 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MDHHSSLCPI KYTEHKRTIR KVTKPSVIKP KKVSDVRKSS EYNPRTVRIC VTDPDATDSS 60 SDEDELFGRK RVKRYISEIS IESPSVNDVK TLSSGNGKKR VAEGSQAKQK ALKGKEVADK 120 TVRKFRGVRQ RPWGKWAAEI RDPARRVRLW LGTYDTAEEA AMVYDNAAIK LRGPDALTNF 180 ITPPIKEKPE VNVASNSGYE SGDESHNLSS PTSVLRFRSS ESSEEAEPGL EDIKENCTVL 240 VEEEPNSEHL ECQGETLTVI PDYSNDYLPT DVSFLDDYFN FADAEQSLFN DTTSFTNDDL 300 FSSWDFTNDS VLDPEICKFD DSFLDLGALE VDNYFKDIGD FSSVDVLMAL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 123 | 180 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g051840.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004241128.1 | 0.0 | ethylene-responsive transcription factor CRF4-like | ||||
TrEMBL | A0A3Q7HNY3 | 0.0 | A0A3Q7HNY3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g051840.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 2e-73 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g051840.1.1 |
Entrez Gene | 101244085 |
Publications ? help Back to Top | |||
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